Vibrio crassostreae: IS519_12995
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Entry
IS519_12995 CDS
T08776
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vcra
Vibrio crassostreae
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcra03009
]
IS519_12995 (rlmD)
Enzymes [BR:
vcra01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IS519_12995 (rlmD)
Ribosome biogenesis [BR:
vcra03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IS519_12995 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
Cons_hypoth95
TRM5-TYW2_MTfase
MTS
PCMT
Methyltr_RsmB-F
RrnaAD
Methyltransf_23
Methyltransf_15
DREV
Wtap
Motif
Other DBs
NCBI-ProteinID:
UPR29050
LinkDB
All DBs
Position
1:2845016..2846335
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AA seq
439 aa
AA seq
DB search
MARFFQPKKKTQLETKHQSVLVERMDHNGAGIAYQKNKPVFIDGALPGEQVVIQLTESKS
KFSRAKLIKLLKPSEQRLKPFCKHFNQCGGCHLQHLGYSSQVEHKSQSLTHLMSQYQTVN
TEVAQPIVGDETGYRRRARISLFVDKKTQQLQFGFRKKQSKQIENITDCAVLDPRLNVLL
PKLKNLLNTFNNLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALIALAKEEGATLYSM
PETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDL
FCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATSNAALNQLGNTEFYQANLEEDLSSQPWA
KEKFDKVLLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGM
LDMFPHTSHLESMALFIKA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacgttttttccaaccaaaaaagaaaactcaactcgagaccaagcatcaatcggtt
ttggttgaacgaatggatcacaatggcgctggcatcgcttatcaaaagaataaaccggtt
ttcattgatggcgcattgcccggtgagcaggtggttattcaacttactgagagcaaaagt
aagttttcgcgggctaagctcatcaagttattgaaaccgagtgagcagcgtttaaagccg
ttttgtaagcactttaatcagtgtggtggctgtcaccttcaacacctaggttactcttct
caggttgagcataaatcgcaatctctgacgcacctgatgagccaataccaaacggtgaac
actgaagttgcacaacctattgtcggtgatgaaaccggttatcgacgtcgcgcacgtatc
agcctatttgttgataaaaagacacagcagcttcagttcggtttccgtaagaagcagagt
aagcagattgaaaatatcaccgactgtgccgtgcttgatcctcgcctcaatgtattgctg
ccaaaactgaaaaatttactgaacactttcaacaaccttacgtctttaggacacgttgaa
ttggtgttgggcgatactggccctgtaatggtgctacgtcaccttaagcctttggttgaa
aaagatgagcaagcgctgattgcgttagcaaaagaagaaggcgctacgctgtactctatg
cctgaaaccgataagttggtccgtctggtcggtgatgcgcctagctacagtgaaacaggt
gttaccttaccttttgaaccaaatcactttatccaagtaaaccagaaagtgaatcagcag
atggtggctcaagcgattgagtggctagagcctcaagcggatgagcgagtgctcgacctg
ttttgtggcctaggtaacttcagtctgcctatcgcgcaacaatcggcgtttgtagttggt
gtagaaggcgttgatgaaatggttcagcaagccacatctaatgcagcgttaaaccagtta
ggcaatacggagttttaccaagctaaccttgaagaagacttatcttcacagccttgggca
aaagagaaattcgataaagtattgcttgacccggcacgtgcgggagcgagtgggatcgtt
gatcaaatttcagcgttaggagcgaagcgtgtggtttatgtttcgtgtaatcctgctact
ctagctagagattctgagagcttagaaaaacaaggctatcaattagccaaactgggtatg
ttggacatgttcccacacactagtcatctagaatctatggctctatttatcaaggcttag
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