Vibrio crassostreae: IS519_15275
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Entry
IS519_15275 CDS
T08776
Name
(GenBank) LysR family transcriptional regulator
KO
K10918
LysR family transcriptional regulator, transcriptional activator AphB
Organism
vcra
Vibrio crassostreae
Pathway
vcra05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
IS519_15275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcra03000
]
IS519_15275
Transcription factors [BR:
vcra03000
]
Prokaryotic type
Helix-turn-helix
LysR family
IS519_15275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
MurB_C
Motif
Other DBs
NCBI-ProteinID:
UPR29479
LinkDB
All DBs
Position
1:complement(3362262..3363137)
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AA seq
291 aa
AA seq
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MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEA
GERFFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQYPDI
NIELMMNNQADQLDPTEWDVIFRVGPQRDSSLIARKISEVKDILIASPEYLAKNPAPSHA
EELANHSLLKGYPLIKWQLSNSNEETVVNSEKGRFNANALNVVRQACSEGLGITLMPDVM
IREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIAYHIH
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagatgatttaaacctctttcgactcgtcgttgaaaatgggagctacaccgca
acatcgcgcaagactatgattccggttgcgaccatcacacgacgcatccaagccttagaa
gactctttgaaccttaggcttctcaatagacacgcgcgtaaactttctttaacagaggca
ggcgaacgtttcttcaatgaatgctctccgctgttgcaacgtctctcttctactgcagaa
gagttaactgacgtgtgtaaaggcgcttccggtaagattcgtattacggcaccctcaaat
ctgaccaagcgcatgatgatgccaatgttcagtgaattcatgactcaataccctgatatc
aatattgagctgatgatgaacaaccaagcggatcagctggatccaacggagtgggacgtg
attttccgtgtcggaccgcagcgtgattcaagcctaatcgctcgaaaaatcagtgaagtc
aaagatattcttatcgcgagccctgagtacttagcgaagaacccagctccaagccatgct
gaagagctagcgaaccattcgctacttaaaggctacccgctgattaagtggcagctgagt
aattcgaatgaagagacggtggtaaatagcgagaaaggccgtttcaacgccaatgcgctt
aatgtcgtgagacaagcgtgctcagaaggcctaggtatcaccctgatgcctgacgtgatg
attcgtgaatacattgaagatggcagcttagtgcaagtcttagaagactggagcgctaac
cctcgtgatatttacatgctttataaccacaaagaccatctaccagagaaagttagattg
tttattgattttgtgatcgcgtaccacattcattaa
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