Vibrio crassostreae: IS519_19310
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Entry
IS519_19310 CDS
T08776
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vcra
Vibrio crassostreae
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcra03009
]
IS519_19310 (dbpA)
Enzymes [BR:
vcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IS519_19310 (dbpA)
Ribosome biogenesis [BR:
vcra03009
]
Prokaryotic type
rRNA helicases
IS519_19310 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
AAA_19
CMS1
Helicase_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
UPR32685
LinkDB
All DBs
Position
2:656945..658324
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AA seq
459 aa
AA seq
DB search
MSTSKFSSIALKPELLNTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGL
GVLQNLRVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSL
EHGAHILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKERQ
TLLFSATFPKQIKSVADRIMRNPEMVKVESTHDHSSIQQHFYKLEGSEARDDALELLLLH
HQPESAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVAT
DVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQIDE
YMDMPIEPSELPAKPIAKPYYSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVGKI
NLFAMRAYVAVERSVAKKALNKIESGKMKGRQFRARILK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacttcaaaattctcttcaatcgcccttaaaccagagcttctaaatacgttagat
tctcttggttatactgaaatgacgccgatccaagcgttaagtcttcctactatcctaaat
ggcaaggacgttatcggtcagggtaaaacgggttcaggtaaaacagctgctttcggttta
ggcgtgctgcagaacctacgcgttaagcgtttccgtgttcagtctttagtgttatgtcct
actcgtgagcttgcagaccaagtagcaaaagagattcgtactcttgctcgtggtattcac
aacattaaagtgctgacactatgtggcggtatgccaatgggcccacagattggttcacta
gagcatggcgcacacattcttgtgggcacacctggtcgtatcctggaccacctagagaga
gagcgtattgacctgtctgagctgaacacacttgtgttagatgaagctgaccgcatgcta
gaaatgggcttccaagacgctttggatgctgtgattgaagcggcgccaaaagaacgccaa
actctactattcagtgcgactttccctaagcagatcaaatctgttgcagaccgcatcatg
cgcaatccagaaatggtgaaggttgaatcaacacacgatcactcaagcatccaacaacac
ttctacaagttagaaggttctgaagctcgtgatgacgctctagagttgctgttacttcat
caccaaccagaatctgcggttgtgttctgcaacactaagaaagaagtgcaaaacgtaaac
gacgagctaagccaccgcggtttcagtgttatcgaacttcatggcgacatggaacagcgt
gaacgtgaccaagctttggttcagttctcaaacaaaaccatctcgattctcgtggcaaca
gacgttgcggctcgcggtcttgatgttgataacctagatgctgtgttcaactttgaattg
tctcgcgaccctgaagttcacgttcaccgtattggtcgtactggccgtgcaggaagcaaa
ggcgtagcgatcagcttctttagcgaaaaagagatgtatcgtgttgctcaaatcgatgag
tacatggacatgccaatcgagccatctgaactgccagcaaaaccaattgctaagccgtac
tactcaaacatggttaccatccaaattgatggcggtaagaaagctaagcttcgtgctggt
gatattcttggcgcactgacgggccaaggcggcattgatggtaaatcagtaggtaagatc
aatctgtttgcaatgcgtgcttacgtagcggtagaaagatctgtggctaagaaagcactg
aacaaaatcgaatcaggtaaaatgaagggtcgtcaattccgcgcccgaatcctgaagtaa
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