Vibrio crassostreae: IS519_19430
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Entry
IS519_19430 CDS
T08776
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcra
Vibrio crassostreae
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcra03016
]
IS519_19430 (rnb)
Enzymes [BR:
vcra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IS519_19430 (rnb)
Transfer RNA biogenesis [BR:
vcra03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IS519_19430 (rnb)
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
UPR32709
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All DBs
Position
2:complement(683814..685820)
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQETLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCVHGDKV
IAIIRTEKEREVAEPEELVEQGLTRFIARVKLFKGRLNVVPDHPQLKKLQLKAKAKKGLN
PETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEPEGI
DNWLINDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPTAYIS
PDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDGVIGD
DINFFAANIKSHARLAYDNVSDWLETGASEKWQPSEEIAAIVSDLHQFAQARSAWRSANA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANKLVEESMISANICAGRVLKESFNQGVFNC
HSGFKAEKVSDVLELVNPQAEIPFTEEQIVSLEGFATLRRWLGSLDNSYYDNRIRKFQAY
SEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAPIQTPDETIGDELAL
HRRHHGMAERNVGDWLYARTLANAPAEETRFQAEIFDINRAGMRVRLLENGAAAFIPGSL
ILDNKERIECNGDMGTVSIDKEMVYKLGDVLEVVLSEVNQENRNLVAKPTQVFADLPSEP
ETTNETEA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctctactcgctcagctcaagcagcaaatccaagaaaccctccct
aaaaaggaaggtactatcaaagccactgaaaaaggttttggttttctcgaagttgatagc
aaaacaagcttctttatcccgcctccgtacatgaaaaaatgtgttcacggtgacaaggtg
attgccatcattcgcaccgagaaagagcgcgaagtagcagagcctgaggaattggttgaa
caaggtcttactcgctttattgcgcgagttaagcttttcaaaggccgattgaacgttgtt
cctgatcacccgcaactgaaaaaactgcaacttaaagcgaaagcaaagaagggcctaaac
cctgaaacgcttaaagaaggtgactgggttgttgctcatatcgttcaacacccattaaaa
ggtgacaatggcttcttggctcagatctctgagaaaatcacagacgctgacgacaagatt
gcaccttggtgggtaacgctggcacaaaacgacctaccaaacagtgagcctgaaggtatc
gacaactggctaatcaacgatgacgccgatcttgaacgtgtagacatgacgcacgtccct
tttgtgactatcgatggtgaaagcacaaaagatatggacgatgcgctttacgcgaagaag
aaagagaacggtgattttgaactgactatcgcaattgctgatccaacggcttacatctct
ccagatgatgcgatggataaagtagcacgcgagcgcggtttcactatctaccttcctggt
cgtaacatcccgatgttgcctcgtgatcttgctgacaacctatgttcactgatcgagaat
gaagttcgtccggcactttgctgcacagtaacggtatctaaagatggcgttattggtgat
gacattaacttcttcgctgcgaacatcaaatctcatgctcgtcttgcttacgataacgta
tcagactggctagaaacaggtgcatcagagaaatggcaaccatcagaagagattgctgcg
attgtttctgaccttcaccaattcgctcaagcacgttcagcatggcgctcagcaaacgct
gttgtattcccagatcgccctgactaccgctttgaacttagcgaagataacgatgttgtc
gctatccacgctgacatgcgtcgtagcgcaaacaaactggttgaagaatcaatgatcagc
gcgaacatctgtgcgggccgagtactcaaagaaagcttcaaccaaggtgtgtttaactgc
cactctggtttcaaggctgagaaagtatctgacgttcttgaactggtaaacccgcaagcg
gaaataccgttcactgaagagcaaatcgtttctctagaaggttttgctactctgcgtcgt
tggttgggctctttagacaacagctactacgacaaccgtattcgtaaattccaagcgtac
agcgagatcagcaatgagccagcaccacactacgcgatgggtttagatatttacgcaact
tggacttctccaattcgtaaatacggcgacatgattaaccaccgtatgctaaaagcgcac
atcctaggtaaagcgccaattcaaacaccagatgaaaccattggtgatgaacttgcccta
caccgccgtcaccacggtatggctgagcgtaatgttggcgattggttgtatgctcgtact
ctagcgaatgctccagcggaagaaactcgcttccaagcagagatcttcgatattaaccgt
gcaggtatgcgtgtacgtttacttgaaaatggtgctgctgcatttatccctggttctctc
attcttgataataaagaaagaatagagtgcaacggagatatgggtactgtatctatcgat
aaagaaatggtatacaaactgggagacgttttagaagtagttctctccgaagttaatcag
gaaaaccgcaacttagtagcaaaacctactcaagtatttgcggacttgcctagcgagcct
gaaacgacaaacgaaaccgaagcttaa
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