Vibrio crassostreae: IS519_19435
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Entry
IS519_19435 CDS
T08776
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS519_19435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcra03019
]
IS519_19435
03009 Ribosome biogenesis [BR:
vcra03009
]
IS519_19435
Enzymes [BR:
vcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IS519_19435
Messenger RNA biogenesis [BR:
vcra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IS519_19435
Ribosome biogenesis [BR:
vcra03009
]
Prokaryotic type
rRNA helicases
IS519_19435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UPR32710
LinkDB
All DBs
Position
2:686129..688189
Genome browser
AA seq
686 aa
AA seq
DB search
MESVSDWISIGIDRAPGTFCLLIYSGIPMSESVIQFNELALNDNILSALDSMGFVSPTPI
QAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMAPTRELAIQVAA
EIKNLGRDIKGLKVIEIYGGASIVDQMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHT
FVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG
TNHTVDKVAQNFWVVKGVEKDEAMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKA
AALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHR
IGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQLPLRDQVAAARVAKLGAELE
TEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQGKSPLFYVGEDPMIAAIERDKN
RRKERREDRENGRGDRNFNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIK
LDQGSTYVQLPKAMNSETAGKLSKLRIRQKEAGAVVVDFNDFREPRRGGGGRDGNRGGGR
GGRDGGGYRGNRDGNREGGNREGGRGGYRGNRDGARDGNREGGRDGERRFDRNRGGDHRG
NFRGERGHGNGNGGGNRGRRPERNEG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtatctgattggatcagtattggaattgatagagctcccgggaccttttgt
ttacttatatatagtgggatcccaatgtccgaatctgtaattcaatttaatgaattagcc
ctaaacgataacattctttcagctcttgatagcatgggtttcgtttctccgactccaatc
caagcagcagctattcctcttcttcttgaaggccgtgacgcactaggtaaagcacagact
ggtactggtaaaacagcagcattctctctgcctttacttaacaaaatcaacctaaaccaa
cacaaaccacaagcaatcatcatggctcctactcgtgagctagcgatccaagttgctgcg
gaaatcaaaaaccttggccgtgatatcaaaggtcttaaggttattgaaatctacggtggt
gcttcaattgttgaccaaatgcgtgctctaagccgcggtgctcacattgttgttggtact
ccaggtcgtgttaaagacttactaactcgtgaccgtctacacctagatgaagcacacaca
tttgttcttgatgaagcagatgaaatgctaaaaatgggcttcgtagatgacgttacttgg
atcctagagcaagctccagaatctgcacaacgtgtacttttctctgcaactatgcctcca
atggttaagactattgttgaccgttacctacgtaacccggctaaagttgacgttgctggt
actaaccacacagttgataaagtagcgcagaacttctgggttgttaaaggcgtagaaaaa
gacgaagcaatgtctcgtcttctagaaactgaagaaactgacgcgtcaatcgtattcgta
cgtactcgtcaagatactgagcgtctagctgattggctatctgcacgtggcttcaaagct
gctgcactgcacggtgatattcctcagtctctacgtgagcgcactgttgatcacatcaaa
caaggtgttatcgacattctagttgcaactgacgttgtagcacgtggtcttgatgttcca
cgtatcactcacgtatttaactacgacatcccattcgatgttgaatcttacatccaccgt
attggtcgtactggccgtgctggacgtaaaggtaaagcgatcctactagttcgcactaac
caaattcgcatgcttcgtacaatcgagcgcgtaactaagtcatctatggaagaaattcaa
cttcctctacgtgaccaagttgctgcagcacgtgttgctaagcttggcgctgaacttgaa
acagagaaagaaagcaaagctctagaaaactttgcaggtcttatctctactcttcaagag
tctctagaagttgatgctgctactctagctgcaatgcttcttaagcgtcagcaaggtaag
agcccgctattctacgttggcgaagacccaatgatcgctgctattgagcgtgacaagaac
cgtcgtaaagagcgtcgtgaagaccgtgaaaatggtcgtggcgatcgcaacttcaatacg
caagattgggatacttaccaactacaagttggccgtgagcaaggcgttcaggttaaagac
atcgttggcgcactagcaaacgaacttggcctaactaaaggttctatcggtgctatcaag
ctagaccaaggttctacttacgttcaactgccaaaagcaatgaactctgaaactgcgggt
aagctaagcaaactacgtattcgtcaaaaagaagctggcgctgttgttgttgatttcaac
gacttccgtgagcctcgtcgtggcggcggcggtcgtgatggcaaccgtggcggcggtcgt
ggcggtcgtgatggtggcggctaccgtggtaaccgtgatggtaaccgcgaaggtggcaac
cgagaaggcggtcgtggtggataccgtggcaaccgtgatggtgcacgcgatggtaaccgt
gaaggcggccgtgatggcgagcgtcgtttcgaccgtaaccgtggtggcgatcaccgtggt
aacttccgtggcgaacgtggccatggtaacggcaatggcggtggtaaccgtggtcgtcgt
ccagagcgcaacgaaggttaa
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