Vibrio crassostreae: IS519_20990
Help
Entry
IS519_20990 CDS
T08776
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IS519_20990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcra03019
]
IS519_20990
Enzymes [BR:
vcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IS519_20990
Messenger RNA biogenesis [BR:
vcra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IS519_20990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UPR31348
LinkDB
All DBs
Position
2:1057271..1058560
Genome browser
AA seq
429 aa
AA seq
DB search
MTNTTTPTNFSDLGLISPLMARLSELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTA
AFALPLLQKIHEDAPLDRRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVC
VFGGVSVNTQMQALRGGTDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTE
ELDAILKLLPSKKQTLLFSATFPEQVKTLTHELLNDPIEVQLQSANASTLVQRVFEVEKG
RKTALIAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILED
FKSGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLID
HEDYHHFKIIEKKNKIRLEREQIEGFEVDEEATAELIAALKPVAPPAGTGKKKKKKKAPQ
NQDVWLNNN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaccactacaccaaccaacttctctgatcttggcttaatctctcctttgatg
gctcgtttatctgagcttgaataccaacagccaacgcctatccaagcgcaagttattcca
agtgtgttagcaggacgcgatttaattgcaggcgcaaataccggttcaggtaaaaccgca
gcatttgcacttccactgttacaaaagattcatgaagatgcacctctggaccgtcgttca
ggcaaaggtaactttgtttctggccttatcttggttcctactcgtgaacttgcgaagcaa
gtggctgacagcgttaaatcttacgctgtgcatttcaatggcgcgattaaaacggtttgt
gtgtttggtggtgtatcggtaaacactcagatgcaggcgctacgtggcggcactgatatc
ttggtggcaacaccgggtcgtctgcttgaccttatttcaagcaacgctatcaagctagac
aaagtaaaaacgttagtgcttgatgaagctgaccgaatgctaagcctaggttttaccgaa
gaacttgatgcaatcttgaagctcttgccgagcaagaaacaaaccttgttgttctctgca
actttccctgagcaagttaaaacgctgactcacgaactactgaatgatccaattgaagtt
caacttcaaagtgccaatgcgagcacactggttcaacgtgtatttgaagtagaaaaaggt
cgcaagacagcgttaatcgcacacctaattcaacaacacgaatggcgccaagctctgatc
ttcgttaatgcgaagaacagctgtgagcacctagcagacaagctttacaagcgcggcatc
atcgctgaagtattccacggtgataaagggcaaggttcacgtactcgtatcctagaagat
ttcaaatctggcgagattgacgttcttatcgcgacagacatcgcggcacgtggtctggat
attgagaagcttcctgtggtaatcaactttgacttgccgcgtagcccatcagactacatg
caccgtatcggccgaagtggtcgtgcaggtgaggttggtcttgcgctatctttgatcgat
cacgaagattaccaccacttcaaaatcatcgagaagaagaacaagattcgtcttgagcgt
gagcaaattgaaggctttgaagtggatgaagaagcgacagctgaacttatcgctgcacta
aaacctgttgcgccaccagctggtacaggcaagaagaaaaagaagaagaaagctccacaa
aaccaagatgtgtggctaaacaacaactga
DBGET
integrated database retrieval system
