Vespa crabro (European hornet): 124422923
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Entry
124422923 CDS
T09462
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124422923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcrb03019
]
124422923
Enzymes [BR:
vcrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124422923
Messenger RNA biogenesis [BR:
vcrb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124422923
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
DUF417
ERF
Motif
Other DBs
NCBI-GeneID:
124422923
NCBI-ProteinID:
XP_046815939
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All DBs
Position
3:8943154..8946326
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AA seq
524 aa
AA seq
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MEVTRKNFEKILPMVKEVLKEAEFIAFDSEFTGLNSDDINSSYFDTIEEQYEYLRKTTES
FIIIQFGITAVTKLETDKYKTATFNFYLFPMSIPTKNRRFLCQVGAVEFLSSYYFDFNKV
IYNGISYLNKTEKVILKQYLENDELLKNVENNMLYKNDNEIKRAIDTVAKWLENSNKNDN
VLKLFASSYNVQYFLQKVLRDRFPVIWTTSNDKEVTIFMVTLEVRKILEKEEEQNLDEAL
LDSYVGFTKVFNFLVDLKKPIVGHNPLLDLMYMYKLFYKSLPKNYKEFKTEIHKLFPKIF
DTRCLSYQLKDDNKEDLCLSHSLGSLYYFFSEGKGSNHISKSVTIETGYSIKNLYKAHDA
GFDSYLTAYIFIKMAYVYIIAKKEETFPYSIVYGIKEFMNYINLPHTSNFYLKLDGEDPE
TEKPQLLFVKTPIDVDISQISKKLAPFGSFNIKPFKRNRTFIAVASHGSARDILNHFRNN
KELHIVPYNPIKHSPSIRYLIFGSAFLSGGIVAWMFHRSISKSI
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcacgaggaaaaatttcgaaaaaatattaccaatggtaaaggaagttttaaaa
gaagcagagtttattgcttttgattcagaatttactggtttgaacagtgatgatataaat
tcaagttatttcgatactattgaagagcaatatgaatatttacgaaaaactactgaatca
tttataattattcaatttggtattaccgctgtcacaaaattggaaactgataaatataag
actgcaactttcaatttttacctttttcccatgtctattccgacaaagaatagacgattc
ttatgccaggttggagcagtagagtttttatcttcttattatttcgattttaacaaggta
atttataatggtatttcatatcttaacaaaactgaaaaagttatattgaaacaatatttg
gaaaatgatgagctattaaaaaatgttgaaaataatatgttatataaaaatgataatgaa
attaaaagggccattgatacagtagctaaatggttagaaaatagtaataaaaatgataat
gttttaaaactttttgcaagttcttataatgtacagtacttcttgcaaaaagtattaaga
gatcgttttccagtaatctggacaacaagtaatgataaagaggtaacaatatttatggta
acattggaggtacgaaagatattagaaaaagaagaagaacaaaatttagatgaagccttg
ttagattcatatgtaggatttacaaaagtatttaatttcttggtagacctaaagaaacct
attgttggacataatcctttactcgatctaatgtatatgtacaaattattttataaatct
ttaccaaaaaactataaagagttcaagactgaaatacataaactatttcctaaaattttt
gatactagatgtttaagttaccaactaaaagatgacaataaagaagatttgtgtctttca
cattcacttggctctctttactacttctttagcgaaggcaaaggatctaatcatatatct
aaatcagtaacgatagaaacaggttacagcataaaaaatctatataaagctcatgatgca
ggatttgattcatatttaactgcatacatatttattaaaatggcatatgtatatattatt
gcaaagaaagaagaaacatttccatacagtatagtgtatggtataaaagagttcatgaat
tacataaatttaccacatacttccaatttttatttaaaactagatggtgaggatccagaa
acagaaaaaccacaattactgtttgtaaaaacaccaatcgatgttgatataagtcagata
tcgaagaaattagctccctttggatcttttaatataaaacctttcaagcgtaatcgtact
tttatagctgttgcgagtcatgggagtgcacgtgatattttaaatcattttcgaaacaac
aaagaattacatattgttccttacaatcccataaaacattctccatcgataaggtatctt
atttttggtagcgcgttcttatccggcggaattgtagcttggatgtttcatcgttctata
tcaaaatctatttaa
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