Vespa crabro (European hornet): 124423363
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Entry
124423363 CDS
T09462
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03008
Ribosome biogenesis in eukaryotes
vcrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124423363
09123 Folding, sorting and degradation
03018 RNA degradation
124423363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcrb03019
]
124423363
03009 Ribosome biogenesis [BR:
vcrb03009
]
124423363
03016 Transfer RNA biogenesis [BR:
vcrb03016
]
124423363
03036 Chromosome and associated proteins [BR:
vcrb03036
]
124423363
Messenger RNA biogenesis [BR:
vcrb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124423363
mRNA degradation factors
5'-3' decay
5' exonucleases
124423363
Ribosome biogenesis [BR:
vcrb03009
]
Eukaryotic type
Pre-60S particles
RNases
124423363
Transfer RNA biogenesis [BR:
vcrb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124423363
Chromosome and associated proteins [BR:
vcrb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124423363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
124423363
NCBI-ProteinID:
XP_046816955
LinkDB
All DBs
Position
4:complement(8522261..8530103)
Genome browser
AA seq
1596 aa
AA seq
DB search
MGIPKFFRYISERYPCLSEMLKDYQIPEFDNLYLDMNGIIHACSHPNDSDINFHITNDEI
FNNIFHYIEILFGMIQPQKLFFIAIDGVAPRAKINQQRARRFRAAKGTEMQKAKAKASGI
DLKEELFDSNCITPGTVFMSEISKRLKYFITYKVSTDKLWQKCKVLFSGPEVVGEGEHKI
MDYIRYLKSQIDYDPNIRHCLYGLDADLIMLGLCTHERNFSLLREEVKFGKKQKKVLTPE
ETKFCLLHLSLLREYLNHEFSPIEDKLSFPFNIEHIIDDWVLMGFLVGNDFIPNLPNLNI
TNGALPILYHVYMEVLPTLEGYINESGRLRLDRFEIFMERLSRIDIENFAEYYCDLKYLE
AKMNKNKNTENDEQISQKDEDSSKNCSPSIKVGNLIRSSINMEMQDAEEEKIKYSHDDGL
DYESDSDTYNMEFILHKRDYYMNKLEYEDVNEDVLRSQAEGYVRAIQWNLHYYYNGCCSW
SWYYPHHYAPYISDIKGFKDLKFDFELGEPFQPFQQLLAVLPSYSKQLLPEALQSLLTEE
ESPIIDYYPSDFKTDLNGKKQDWEAIVLIPFIDEKILTEAMEPYYVKLSVEEHERNKHGP
MYMYSYDKEILGLCHLPGNLPVIENHAQIKIINREDIYVPKEKLVKGLHPRVKCDIHYPG
FPTLKYIKHTANLKKAKVKVFEQPSRGDNMILYIQQQEEPNLRQLAASLLHKTIFVEWPY
LREAHIVGVSNHKWRINLINPQKEYSSDNIVEEELKGACSVQWTSEIKSIVETYKNRFGI
DIGKTNILIHAQPLIGSKYIFAAQGKLSVEKQWQEMPTFYAYQTIVKDISTYCVNPLLYK
TIDEIFVPGSNCFMLGHPHYGAMGEVIGPKINMNSGRIKIYVKVVTEPDLAVVKQAYTES
KIQYIYGSTAAQRLGISSHLLSRITGTIYIMQNNTNEIINVGLNLKFNKKNEEIPGYTKK
ENGQWLYSIKAVDLIRDYMAKCPGLFERLAQNITNDVFNEDELFDKSSNELNSIIAWLKE
QHFRGVESRPCGANILEADIVQKIEQEVDKYYEMYNDSNKAVVIQVKPQLLFKPELYSRQ
LPPDPKSHTRLLDRIVCIRGSFTVPIGYKGTIIGIQKTKAIIDSIYDVLFDKSFLGGLTF
NGCSEHRGYKLSITDFINISHGERVERGKSGIENTSIETTDSWRRYQNAKNQVHSNVKPI
TQHKPSYELQHASKQLSSEFQQLWNELHKIEDSSGSSKTSNTSIVESNEINKQKSKQISQ
DPSAFLKEVLKISDDNTLINLPTKSSGTSANKNQSQIHKSSDAPPLVQKLFDYARQKRNE
VKDDKNSIWYCSHLLNHYQILGMGLPRYDYFLNEQTNLIQAQILLPDAKVYLGDPCLTHA
QAAESAARKVYEELNLEKVQKPDMKLLLKPPSQQWVNMRQNSSWSQNIRPPMLLPYISKP
YQTSDNPVAHCSKWNMKMQQNPGFAHMAPHNSQIKVQTRQKTNESKSEIKNSTSFVPLQA
QKKSRNVNTRQINKETTQNHANSSQSGKQSAKQQETKETTFPKPPKASNVNKTVEKEVRV
QNNLQSSPKLQKSERPKRSRVAAKFVSPPATNGSEQ
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atgggtatacccaaattttttagatatataagcgaaagatatccttgcctaagtgaaatg
ttgaaagattatcagattccagaattcgataatttatatttagatatgaatggcatcata
catgcttgttcacatccaaatgatagtgacataaattttcatattacaaatgatgaaatt
tttaacaatatattccattatattgagatattatttggtatgattcaacctcagaagtta
ttttttattgcaattgatggtgtagccccaagagccaaaattaatcaacaaagagcccgt
cgttttagagccgctaaaggaacagaaatgcaaaaggctaaagccaaagcaagtggtatt
gacttaaaagaggaattatttgattctaattgtattacaccaggaacagtttttatgtcc
gaaattagtaaacgattaaaatattttattacgtacaaagtatcgacagataaactttgg
cagaaatgcaaggttttatttagcggtccagaggttgtaggagaaggagaacataaaata
atggattatatacgatatttaaaatcacaaatagattatgatcccaatattaggcattgc
ttgtatggcctagatgcagatttaattatgttgggtctttgtacacatgaacgtaatttt
tcattattaagagaagaagtgaaatttgggaagaaacaaaaaaaggttttaacacctgaa
gagacaaagttttgtcttcttcatttatcattattaagagaatatttaaatcatgaattt
tctcctatcgaagataaattatcttttccttttaatattgaacatataatcgatgattgg
gtattaatgggttttcttgtgggaaatgattttatacctaatttaccaaatttaaatatt
acaaatggggcattaccaattttatatcatgtatatatggaagtcttaccaactttagaa
ggttatataaacgaatcaggaagattaagattagatcgttttgaaatattcatggaacgg
ctaagtcgcattgacatagagaactttgcagagtattactgtgatctcaaatatttagaa
gctaaaatgaataaaaataaaaatacagaaaatgacgaacaaatttcacaaaaagacgag
gattcatctaaaaattgttctccttcaataaaagtgggcaatttaataagatcatccata
aatatggaaatgcaagatgcagaagaggaaaaaatcaaatattctcatgacgatggatta
gattatgaatctgatagtgatacatataatatggaatttattctacacaaacgtgattat
tacatgaataaactagaatatgaagatgttaatgaagatgttttgcggtcccaagcagaa
ggatatgttagagctattcagtggaatttacattactattataatggatgctgcagttgg
tcttggtattatccacaccattatgctccatatatctcggatataaaaggttttaaagac
ttaaaattcgattttgaattgggagaaccattccaacctttccaacaattattagcagta
ttaccatcgtatagtaaacaattactaccagaagcattacaatcattattaactgaagag
gaatcacctattattgattattatccttctgattttaaaactgatttaaatggcaaaaaa
caagactgggaagctattgtacttataccgtttattgatgagaaaattttaacagaggcc
atggagccatattatgtaaaattgtcagtcgaagaacatgaaagaaataagcatggtcca
atgtatatgtattcatatgataaagagattttgggtttatgtcatctacctggaaattta
ccagtaattgaaaaccatgctcaaataaaaataataaatcgtgaagatatttatgttcct
aaagaaaaattagtaaaaggattacatccacgtgtgaagtgcgatatacattatcctgga
tttcctactttaaaatatataaaacatacagcaaatttaaagaaagctaaggtgaaagta
tttgaacaaccatcaagaggtgacaatatgattttatatatacaacaacaagaggaacca
aacttaagacaacttgctgcctctttattacataaaaccatctttgtggagtggccttat
ctacgagaagctcatattgttggtgtatctaatcataaatggagaataaatttaatcaat
ccacaaaaagaatattcttctgacaatatagtagaggaagaattaaagggagcttgttca
gttcaatggacttcggaaataaaatctattgttgaaacgtataaaaatcgttttggtata
gacattggtaaaactaatatcttaatccatgcacaaccattaataggcagtaaatacatt
tttgcagcacaaggaaaactgtctgtagagaaacaatggcaggaaatgccaacgttttat
gcttatcaaactatagttaaagatatttctacatattgtgtaaatcccttgttgtataaa
actattgatgaaatatttgtaccaggaagtaattgcttcatgttaggtcatccgcattat
ggtgccatgggagaggtaattgggccaaagatcaatatgaactctggcagaataaaaata
tatgtgaaagttgtaactgaaccagatctagctgtggtaaaacaagcatatacagaatca
aaaatacaatatatttatggaagcacagctgctcagagactaggaataagtagtcatctt
ttaagtagaattactggtacaatttatattatgcagaataatacaaacgaaattattaac
gtcggattaaatctgaagtttaataaaaagaatgaggaaataccaggctataccaaaaaa
gaaaatggtcagtggttgtatagtataaaagctgttgatcttatacgtgattatatggca
aagtgtcccggtttatttgaacgattggcacaaaatattacaaatgatgtttttaatgaa
gatgaactatttgataagtcatcaaatgaattaaatagtattatagcttggttaaaagag
caacatttccgaggagtagagagtcgtccttgtggagcaaatatactcgaagcagatata
gtacaaaaaatagaacaagaagtggacaaatattatgaaatgtataatgattcaaacaaa
gcagtcgtaatacaagtgaagccacaattactatttaaacctgaattatattcacgtcag
cttccacccgatccaaaatctcatacaagattattagatagaattgtttgtatcagagga
agctttactgtaccaattggttataaaggaactattataggaattcagaaaacgaaggca
attatagatagtatttatgatgttttatttgataaatcatttttaggtggattaacgttc
aatggatgttccgaacatcgtggttataagttatcaatcactgactttattaatattagt
catggtgaacgagtagaacgtggaaaatcaggaatagagaatacatccattgaaacaaca
gattcttggagacgatatcaaaatgcaaaaaatcaagtacatagtaatgttaaacccata
acacaacataaaccttcctatgaattgcaacatgcttcaaaacaattatcctctgaattt
caacaattatggaatgaattgcataaaatagaggattcaagcggatcttcgaaaacttcc
aatacgagtatcgtagaatctaatgaaatcaataaacaaaaaagtaaacaaatatcacaa
gatcccagtgctttcttgaaagaagtgctgaaaatttctgatgacaacacgctgataaat
ttgccaactaaatcaagtggtacttccgcgaataaaaatcaatcccaaatccataaatca
tcggatgccccaccattagttcaaaaattatttgattatgctagacaaaagagaaacgag
gtaaaagatgacaagaattctatttggtattgttcacacttattaaatcattatcaaata
cttggtatgggtttaccaagatatgattattttttaaatgaacaaacgaacctgatacaa
gctcaaattcttttaccagacgcgaaagtatatttaggtgacccctgtttgactcatgca
caagcagcagaaagtgcagcaagaaaagtatatgaggaattaaatttagaaaaggtacag
aagcctgacatgaaacttttattaaaacctccgtcgcaacaatgggttaatatgcggcaa
aatagttcctggtcacaaaacataagaccacccatgttattaccatatatatcaaaacct
tatcaaacttctgataatccagtggcacattgttcaaaatggaatatgaaaatgcaacaa
aatccaggatttgcccatatggcacctcataatagtcaaattaaagtacagacgagacaa
aagacaaacgaatctaaatctgaaattaaaaatagtacatcgtttgtaccattgcaagct
caaaagaaaagtagaaacgttaatacaagacaaattaacaaagaaacaacgcagaatcat
gcaaacagttctcagtcgggtaaacaatcagcaaagcaacaagagacaaaagaaacaaca
ttccctaagcctccaaaagcatcaaacgttaacaaaactgttgagaaagaagtacgtgta
caaaacaatttacaatcatcgccaaaattacaaaaatctgaacgacctaaacggtcacgc
gttgctgccaaatttgtttcacctccagcgacaaatggaagtgaacaataa
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integrated database retrieval system
