Vespa crabro (European hornet): 124423558
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Entry
124423558 CDS
T09462
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124423558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcrb03019
]
124423558
03041 Spliceosome [BR:
vcrb03041
]
124423558
03009 Ribosome biogenesis [BR:
vcrb03009
]
124423558
03016 Transfer RNA biogenesis [BR:
vcrb03016
]
124423558
Enzymes [BR:
vcrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124423558
Messenger RNA biogenesis [BR:
vcrb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124423558
Spliceosome [BR:
vcrb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124423558
Complex C
U4/U6.U5 tri-SnRNP related factors
124423558
Ribosome biogenesis [BR:
vcrb03009
]
Eukaryotic type
Pre-60S particles
Helicases
124423558
Transfer RNA biogenesis [BR:
vcrb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124423558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
124423558
NCBI-ProteinID:
XP_046817352
LinkDB
All DBs
Position
4:complement(5415034..5419375)
Genome browser
AA seq
1013 aa
AA seq
DB search
MAEFTNDLFDVFEEAGDVEIIPRSVKEVNTIKVDSNNTSKRDLENDHEEQVTKKLKTDSL
LDDINIDELASRIKIHTIETIESCTHEVAVPPDQEYISLETKQTKPAKEYKFVLDPFQKE
AILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFYEEF
KDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVW
EETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQHYIFPVGGD
GIHLVVDETGQFKEENFNRAMACLQHGDAAKGDTKGRKGGLRVTNDGQTNIFKMVKMIME
RNFAPVIIFSFSKKDCEIYAMQMAQLDLNTLEEKKLVDEVFNNAMDVLSEEDRRLPQVEN
VLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRK
FDGKNFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVKPVVCKEIVQGKPDPINSAF
HLTYNMVLNLLRVEEINPEYMLERSFYQFQNQACIPNLYNKVKKLEVAYNEINIEKYNQI
STYHDIREQLDRLSTEFRSFLTKPEYLLPFLQPGRLIKVKSGNETFDWGIIVNFKKKNPK
NPIKEKSVLIIDILLHVSKKSSEGSLLPCRDGEEGDIEVVPVLHTLISQISSLRLYHPND
LRPTDNRKSVLKTIQEVKKRFPDGLPLLNPITDMHIEDQSFKDIVKRIEVLEERLYSHPL
HKDCNVNTLYEQFLHKEELGVQLKQAKTELKQAKSILQMDELKCRKRVLRRMAYCTAADV
IELKGRVACELNGTDELLMTEMIFNGLFNSLSIPQMVALISCFVCDDKSNEMPKSTEELS
GPLRQMQDLARRIAKVSTEANLDLDEDTYVERFKPYLMDVVYAWCKGATFLQICKMTDIF
EGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatttactaatgatttatttgatgtttttgaagaggcaggtgatgtggaaata
atacctagatcagtgaaagaagttaatacaataaaagttgattctaataatacatcgaaa
cgtgatcttgaaaatgatcatgaagaacaagtgacgaaaaaattaaaaacagactctctc
ctggacgatatcaatatagatgaattggcatcacgtattaaaattcatactatagaaaca
atagaatcatgtacacatgaagtagcagtaccaccggatcaagaatatatttcattagaa
actaaacaaaccaaaccagctaaggaatataaatttgttttggatccttttcaaaaggag
gcaatactatgtattgaaaataatcaatctgttcttgtttctgcacatacatcggcaggg
aaaactgttgttgcagagtatgcgatagcctgttctttaagagacaaacaaagagtaata
tatacaactcccataaaagctctgagtaatcagaaatacagagaattttatgaagaattt
aaggatgtaggattagtaacaggagatgttacaattaatccaacagctagtgttcttatt
atgacaacagaaattttaagaaatatgctttataggggttctgaggttatgcgagaagtt
ggttgggtaatatttgatgaaattcattatatgcgtgacaaagaaagaggcgtagtatgg
gaagaaactctaattcttttacctgataatgtacactatgtgtttctatctgctactata
cctaatgcacgtcagtttgttgagtgggttgctcatttacataaacaaccatgtcatgtt
gtttatactgactatcgaccaacaccgttacaacactatatatttccagttggtggagat
ggtattcatttggttgtagatgaaacaggacaattcaaagaggaaaatttcaatagagcc
atggcttgtcttcaacacggagatgctgctaaaggtgatacgaaaggtcgtaaaggtggc
cttcgagtaacaaatgacggacaaacaaatatttttaaaatggtaaagatgattatggaa
agaaattttgccccggttattatctttagtttctctaaaaaagattgtgaaatctatgca
atgcaaatggcacaattagatttaaatacattggaagaaaaaaaattagtagatgaagtt
ttcaacaatgctatggatgttttaagcgaagaagacagacgattaccacaagtcgaaaat
gtacttcctcttttaagacgtggtattggtattcatcatggaggacttttgcctattcta
aaagaaactgtggaaattttatttggtgaaggattaattaaagcattatttgccacggaa
acttttgcaatgggattaaatatgcctgcaagaacagttttatttacagcgccacgtaaa
tttgatggcaaaaattttcgttggattacatctggagaatatatccaaatgtctggacgt
gctggtaggagaggcttggatgaaaaaggaatagttattttaatgatcgatgaacaagtt
aaaccggttgtctgtaaagaaattgtacagggaaaaccagatccaataaattctgcattc
catttaacatataatatggtgctcaatcttcttagagtagaagaaataaatccagaatat
atgttagaaagaagtttctatcaatttcaaaatcaagcttgtataccaaatttatacaat
aaagtaaaaaagctggaagttgcatataatgaaatcaatatagaaaagtataatcagata
tctacatatcacgatattcgcgagcaattagatcgattaagtactgaatttagatcattt
ttgacaaaaccagagtatttacttccatttttgcaacctggtagattgataaaggtaaaa
agtggaaatgaaacatttgattggggtattatagtaaatttcaaaaagaaaaatcccaaa
aatccaataaaggaaaagtccgttttgattattgatattttactccatgtatctaaaaaa
tcttctgaaggaagtctattaccttgtcgtgatggagaggaaggtgatatagaagttgtt
cctgttttacatacattaatttcccaaatcagttctcttagattatatcatccgaatgat
ttaaggcctactgataatagaaaaagtgtactgaaaaccattcaagaagtgaaaaaacgg
ttcccagatggactgccattattaaatcccataactgatatgcacattgaagatcagagt
tttaaagacattgttaaaagaattgaagttctagaagaaagactttattctcatcctttg
cacaaggattgtaatgtgaatacattatatgaacaatttttacataaagaagaattaggt
gtgcaactaaaacaagcaaaaacagaactaaaacaggctaaatccatacttcaaatggat
gaattaaaatgtagaaaacgagtacttcgaaggatggcctattgtacagcagctgatgta
atagaattaaaaggcagagttgcttgtgaattaaatggaactgatgaattattaatgaca
gaaatgatttttaatggtttatttaattcattaagtataccacaaatggtagctttaatt
agttgttttgtgtgtgatgataaatctaatgaaatgcctaaaagtactgaagaattaagt
ggaccacttaggcaaatgcaagatttagctcgaagaatagccaaagtttcaactgaagct
aatttagacttagatgaagatacatacgtagaaagatttaaaccatacctgatggatgtt
gtatatgcttggtgtaaaggtgcaacctttctacagatatgtaaaatgacagatatattt
gaaggatcgataataagatgtatgcgtcgtttagaagaagttctaaggcaattatgtcaa
gctgcaaaaaatattggaaatacagatttagaaaataaatttagtgaagcaattaaactt
ataaaaagagacattgttttcgctgcatctttgtatttataa
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