Vespa crabro (European hornet): 124423974
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Entry
124423974 CDS
T09462
Name
(RefSeq) uncharacterized protein LOC124423974 isoform X1
KO
K03679
exosome complex component RRP4
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124423974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcrb03019
]
124423974
Messenger RNA biogenesis [BR:
vcrb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124423974
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
124423974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
KH_6
EF-hand_1
ECR1_N
EF-hand_5
EF-hand_7
EF-hand_6
EF-hand_8
EF-hand_4
Motif
Other DBs
NCBI-GeneID:
124423974
NCBI-ProteinID:
XP_046818346
EnsemblRapid:
ENSVCRG00010011865
LinkDB
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Position
4:complement(6202200..6209302)
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AA seq
612 aa
AA seq
DB search
MDECPNIIVRLAVDRADMNLITNENVQPRFYTPGEEISSQPNFLRGHGTYVDDENTLRAS
VAGVLEKVNKLISVRPLKARYQGEIGDVVVGRITEVQQRRWKVDTNSKLDSVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKVP
PALIKRKKIHFHNLENGASLILGNNGYVWIGANTQETDKSEGGFTQDLSRVPQDNREVCA
RLRNCVLILAQCNMKLSDTSITYAYEESMKYKQKWTNMDACFTAFDKDEDGFLSVSEFKL
ICSALFRNNLGKVYTLEEDQLQEIYSIFDLNNDGMIDREEFEICWNLWIKVCTRPKSAFL
IVDVQNDFISGSLNIKHCAAQHEGLEVIEPINRLLDTVTFDAVFYSLDWHPVDHVSFIDN
LPFREIDESDGISKEMVRVYDSVTFKASPSIKQRLWPRHCVQDSWGAELHKDLKIVKNAI
KIYKGTNSEVDSYSVFWDNKKLTKTTLASQLQEIGTTDIYICGLAYDVCVGATAVDATTN
GYRTILIDDCSRGVDLVDIEKTKANVIANNGIIVNSSQVKAMVEGRDRRPELGYKLALEI
KKKLSAINEVDK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtgtccgaatattattgttcgtttagcagtagatagagcagatatgaattta
attacaaatgaaaatgtacaaccacgattttatactcctggagaagaaatttcgagtcaa
cctaattttttaaggggtcatggaacttacgttgatgatgaaaatacattaagagcttca
gttgctggggttttagaaaaagttaataaattaatatcagtacgaccattgaaagcacgt
tatcagggtgaaattggcgatgttgttgttggacgcataactgaagtacaacaaagacgt
tggaaagttgatacaaattctaaacttgattcagttctgttactatctagtgtaaattta
ccaggaggtgaattgagacgacgatctgctgaagatgaacaaacaatgagacgttattta
caagaaggagatttaatttgtgcagaagtacaaagtacttttgtagatggttctctatca
ttacatacaagagttctaaagtatggtaaattgtctcaaggaataatgttaaaagtacca
cctgctctaataaagaggaaaaagatacactttcacaatttagagaatggagctagttta
atattgggaaataacggctatgtatggattggtgctaatacacaagaaacagataaatca
gagggtggttttacgcaggacttgtctagagtacctcaagataatcgagaagtatgtgct
cgccttcgtaattgcgttctaattttggcacaatgtaatatgaaattatctgatacatct
ataacatacgcttatgaagaatctatgaaatataagcaaaagtggacaaacatggatgca
tgttttactgcctttgacaaagatgaagatggatttctatctgtatcagaatttaaactt
atatgtagtgccttatttcgcaataatcttggtaaagtttatacacttgaagaagatcaa
ttgcaagaaatatattcaatctttgatctaaataatgatggaatgatagacagggaagaa
tttgaaatatgctggaatctttggattaaagtttgcacacgtccaaaaagtgcctttctt
attgtggatgtacagaatgattttatatcaggttctttaaacattaaacattgtgctgca
caacatgagggattagaagtaattgaacctattaatcgtttattggatacagtaacattt
gatgctgtattttattcacttgattggcatcctgtagatcatgtatctttcattgataat
ttacctttcagggaaattgatgaaagcgatggtatatctaaagaaatggtccgagtatat
gacagtgtaacatttaaagcatcaccttcaataaagcaaaggctctggccccgtcattgt
gttcaggattcatggggtgctgaacttcataaagatttaaaaatagttaaaaatgctata
aaaatttacaaaggaactaattcggaagtagattcatactccgtattttgggataataaa
aaattaacaaagacaacattagcttcacaattacaagagataggcaccacagatatatat
atttgcggattagcatatgacgtatgcgtaggtgctactgctgttgatgcaacaacaaat
ggttatcgtactattcttatcgatgattgtagtcgtggagttgatttagtggatattgag
aaaacgaaagcaaatgtaatagctaataatggaattattgtaaattcaagtcaagtaaaa
gctatggttgaaggaagagatagaagaccagaactcggatataaacttgctctggaaatt
aaaaagaaattaagtgccataaatgaggttgacaaatag
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