Vespa crabro (European hornet): 124425704
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Entry
124425704 CDS
T09462
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124425704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcrb03041
]
124425704
03009 Ribosome biogenesis [BR:
vcrb03009
]
124425704
Enzymes [BR:
vcrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124425704
Spliceosome [BR:
vcrb03041
]
Complex A
U2 snRNP components
U2 related factors
124425704
Complex B
124425704
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124425704
Ribosome biogenesis [BR:
vcrb03009
]
Eukaryotic type
90S particles
Helicases
124425704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
AAA_7
AAA_25
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
124425704
NCBI-ProteinID:
XP_046822383
EnsemblRapid:
ENSVCRG00010005900
LinkDB
All DBs
Position
1:complement(15776076..15779930)
Genome browser
AA seq
717 aa
AA seq
DB search
MSKRRIDVVDPYVKRRTIGSTSNNVPAAPTDPKNQVQINPYNGLPYTPRYHEFYKKRITL
PVFEYRVDFMRLLANHQCIVLVGETGSGKTTQIPQWCVEYSRCIGIKGVACTSPRRVAAM
SVAQRVSEEMDVCLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLEAYQVILL
DEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPV
EIFYTPEPERDYLEAAIRTVIQIHVCEEVSGDLLLFLTGQEEIEEACKRIKREMDNLGPE
VGELKCIPLYSTLPPNLQQRIFEPAPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDP
GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLG
AIMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFAH
IDGDHLTLLNVYHAFKQNLEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFALKRTSTD
FTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVIYNEF
VLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgtaggattgatgttgtcgatccctatgtcaaacgaagaacaattggatca
acatctaataatgtgcctgcagctcctactgacccaaaaaatcaagttcaaattaaccca
tataatggacttccttatacaccacgctaccatgaattttataaaaagaggataacacta
cctgtgttcgaatatcgtgttgatttcatgaggcttttagcaaatcatcaatgcatagtg
cttgtaggagaaacaggatcaggaaaaactacacagataccacaatggtgtgtggagtat
tcaagatgtataggaatcaagggtgtagcatgtacttcaccaagaagagtagcagcaatg
tctgttgcacaaagagtttcagaagaaatggatgtttgtttaggtcaagaagttggatat
agtattcgttttgaagactgtagttctccaaaaactgtgttgaagtatatgacagatggt
atgcttctacgtgaaggcatgtctgatcctatgcttgaagcatatcaagtaattttactt
gatgaagctcatgaaagaactttagctactgatttacttatgggtgttttaaaagaagtg
ataaagcaaagaccagatttaaagcttgtaattatgagtgcaactttagatgctggaaaa
tttcaacagtattttgataatgcgccactcatgaatgtacctggtagaacacatccagtt
gaaattttttatacgccagaaccagaaagagattatttagaagctgctattagaacagtt
attcaaatacatgtgtgtgaagaagtgagtggagatctacttttgtttttaactggacaa
gaagaaattgaagaagcttgtaaaagaatcaaaagagaaatggataatttaggtcccgaa
gttggtgaacttaagtgtattccactatattcaacattacctccaaatcttcaacaaaga
atttttgaacctgctcctccaaacaaacctaatggtgctattggtcgaaaagttgtagta
tcaactaacatagcagaaacatcattaacaatagatggtgtagtctttgtgattgatcct
gggtttgccaaacagaaggtctataaccccaggattcgtgtagagtcacttcttgtatca
ccaattagtaaagcttctgcacaacaacgtgctggtcgtgcaggtcgtactcgtccaggc
aaatgttttaggctgtacacagaaaaagcatataaaaatgaaatgcaagataatacttat
ccagagattctgcgatcaaatcttggtagtgttgtgttgcaattaaagaagttgggaatc
gatgatctggtacattttgattttatggacccacctgcacctgaaactttaatgagagca
ctggaacttctcaattatttagcagctcttgatgatgatggaaatttaacagatcttgga
gctataatggcagaatttcctttggatccacaattagccaaaatgttaattgcttcttgt
aatcacaattgtagtaatgagatacttagcattactgccatgctttcagtcccacagtgt
tttgtgaggccaaatgaatcaaagaaggcagcagatgatgcaaaaatgagatttgctcac
atcgatggtgatcatttaacattactcaatgtttaccatgctttcaaacaaaatttggaa
gatccacaatggtgttacgacaattttgtcaattatcgatctttaaaaagtggagataat
gtcagacaacaattaagtagaataatggataggtttgctttgaaacgcacttctactgac
ttcacgtcaaaagattattatataaatataaggaaagctcttgtgaatggtttcttcatg
caggtggctcatttagaaagaacaggccattacttaacaattaaggataatcaaattgta
caattacatccaagcacttgtttggatcacaagccagaatgggtgatttataatgagttt
gtactcacaaccaaaaattatattagaacagttactgatattaaacctgactggttacta
aagatagcaccacaatattatgatctacaaaattttcctcaatgtgaagcaaagagacaa
ttagaagttattcaagccaaactggattcaaaacagtatcaggaaggattctaa
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