Vespa crabro (European hornet): 124429427
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Entry
124429427 CDS
T09462
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vcrb
Vespa crabro (European hornet)
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcrb03016
]
124429427
Enzymes [BR:
vcrb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124429427
Transfer RNA biogenesis [BR:
vcrb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124429427
Prokaryotic type
tRNA splicing ligases
124429427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
124429427
NCBI-ProteinID:
XP_046830653
LinkDB
All DBs
Position
15:complement(1515010..1517677)
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINEWSWRIKKGFQPNMKVEGIFYVNNTLERLMFEELRNACRPGTV
GGFLPGMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDLNDPKSIVSPGGVGFD
INCGVRLLRTNLFEHEILPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFRLSPDDLDMHVIYDVSHNVAKIE
EHMVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNLDYKDVLNKLESLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHSAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttagacaatatcaggaagaacttaaatatctagaaaaaattaatgaatggtct
tggagaattaaaaaaggttttcaaccaaatatgaaggttgaaggcatattttatgtcaat
aatacattagaacgtctaatgtttgaagaattacgaaatgcatgtaggccaggaacagtt
ggaggtttccttccaggtatgaagcaaattgctaatgttgctgctttacctggaattgta
ggaagatcagttggattgcctgatgttcattccggatatggttttgccattggtaatatg
gcagcatttgatttaaatgatccaaagtctatagtatcacctggtggagtaggatttgat
ataaattgtggcgttcgtttgttaagaacaaatttatttgaacatgaaattttacctatt
aaggaacaacttgcacaaagtatgtttgatcatatcccagtaggagttggatctaaagga
atcataccaatgaatgcaagagatttagaagaggcattggagatgggtatggattggtct
ttgagagaaggttatatctgggcagaagataaagaacattgtgaagaatatggtcgaatg
ttaaatgctgatccttcgaaagtatcattaagagcaaagaaacgtggtcttcctcagtta
ggtacattaggcgcaggaaaccattatgctgagattcaagttgtagatgaaatttatgat
aaatgggctgcatgcaagatgggtatcgaagaaaagggccaaatttgtgttatgattcat
tctggaagcagaggctttggacatcaagttgccacagatgcacttgtacaaatggaaaaa
gctatgaaaagggataatatcgaaactaatgatagacaacttgcttgtgctcatattaaa
tctcaggagggtcaagactatttaaaagctatgtcagctgctgctaattttgcatgggtt
aatcgaagttctatgacatttctcacacgacaggcatttgcaaaacaatttcgcctttct
ccagatgacttggatatgcatgttatttatgatgtgtcacataatgttgctaaaatagaa
gaacatatggttgatggcaaacaaaaaacacttttaattcatagaaagggatcaaccagg
gcttttccacctcatcatccattgattcctgtagattatcaattaactggtcaaccagtt
ttaattggtggtacaatgggaacatgtagttatgttcttaccggaactgaacaaggaatg
caggaaacttttggatctacgtgccatggagctggtcgtgccttgtctagagcaaaatca
cgaagaaatttggattataaagatgtattaaacaaattagaaagtttaggaatatctatt
agagttgcttcaccaaaactagttatggaagaagctccagaatcatataagaatgtaacg
gatgttgtaaatacatgtcattcagctggtatttctaaaaaatgtattaaactgaggcca
atagcagttattaaaggataa
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