Vespa crabro (European hornet): 124430372
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Entry
124430372 CDS
T09462
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03013
Nucleocytoplasmic transport
vcrb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124430372
03015 mRNA surveillance pathway
124430372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcrb03019
]
124430372
Enzymes [BR:
vcrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124430372
5.6.2.5 RNA 5'-3' helicase
124430372
Messenger RNA biogenesis [BR:
vcrb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124430372
mRNA cycle factors
Common to processing body (P body) and stress granule
124430372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
124430372
NCBI-ProteinID:
XP_046832791
LinkDB
All DBs
Position
18:complement(2441293..2448013)
Genome browser
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPSQ
PIQVNGTSGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNAGAPTECISNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKVHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMTTSMYDAREVLIPGSVYDRSGNQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTPASK
NKSGARMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcttatgggccaagtagccaaaccctaacgttccttgataccgaggaa
gctgatttaattggtgccgatactcaaggaagtgaatttgatttcacagactttacatta
ccatcgccaagccagacacaggcttcgcaacacgatgcggctcaaagtcaaccgagtcag
cctatacaggttaatggaacgagtggtagttcgtcattggacttaaaaatttctggtgct
gctcagagtctagccgaattacaatttgaagaagaagaagaagaggcatattataatcgt
gatttaccagaacatgcttgcaaatattgcggtattcatgaagcttcttgcgtcgttatg
tgcaacgtatgtcgtaaatggttctgcaatggacgaggcaatacatctggttctcatatt
atcaatcaccttgttcgagcaaagcacaaagaagttacattgcacagagatggaccattg
ggtgaaactgtattagaatgttattcttgtgcggttagaaatgtatttgttcttggtttt
ataccggctaaagcagattctgttgttgtattattgtgccgacaaccttgtgcagcccag
agctctctaaaagacatgaattgggatcaagaacaatggaaacctttgatagaagatcgt
agtttcttagcatggcttgtaaagataccatctgaacaggaacagctaagagccagacaa
atatctgctcagcagattaacaaattggaagaattgtggcgagacaatgttgatgcaact
tttcaagatcttgaaaagcctggtgtagatgaagaaccacaacaagtcttattacgttat
gaggatggataccaatatcagaatatatttggaccgcttgtaaaattagaagctgattat
gacaagcgtttaaaagaatcacagacccaagaaaatattgaagtaagatgggacgtaggt
ctgaataaaaaaacaatagcatattttatgttagctaaaaccgatggtgatatgaaatta
atgcatggagatgaattaagacttcgttatttgggagaacttcacaaaccatggtctggt
attggccatgttatcaaaattcctgacaattatggagaagaagttggtatagaattgaaa
aataacgcaggcgctccaacagagtgcattagtaattttgtcgttgatttcatctggaaa
agcacaagctttgatcgaatgcaattggcactacgaaaatttgccgtggatgatacatcc
gtatcagcgtatatatatcatagattgctcggtcacgaggtagaagaagttctatttcgt
tgtcatttaccgaaacactttagtgctcctaacttgccagatttaaatagatcccaagtg
tacgctgtaaaacatgctgtacaacgaccattgtctttgatacaaggtccgcctggtaca
ggaaaaactgtaaccagcgctacaatagtatatcagcttgtaaaacaaaacggaggtccg
gtacttgtttgtgcaccatctaataccgcggtcgatcaacttacggagaaagtacataaa
tctaatttaaaggtagtacgtctttgtgcaaaatcacgtgaggcaattgattcgcccgtg
agttttcttgcattgcacaatcaaataaaaaatatggagacaaatacggaattgcaaaag
cttcaacaattgaaagacgaaacgggtgaattgtcaagcgtagatgaaaaacgttataga
cttttaaagaaagctgcagaaaaagaattgttagaggcggccgatgtgatatgttgcacc
tgcgttggcgcaggtgatccaagattgcacagattaaaatttcactctatacttatagat
gaaagtatgcaagcaacggaaccagaatgtatggtaccagttgtccttggagctaagcaa
ttaatacttgtcggagaccattgtcaattaggacctgtcgttatgtgtaaaaaagctgca
agggctggactttcccaatcgttatttgaaagattggtcgttcttggaatcagaccattt
cgtcttgaggtccaatatcgtatgcatccagatctgtctcgttttccatctaatttcttt
tacgaaggttctcttcaaaatggagtgtgcgccgacgaaagaaaattattaaagattgat
tttccctggcctgctcctgacaaacctatgttcttctacgtaactcaaggtcaagaagaa
attgctggtagcggtacatcttacttgaaccgtacagaagcatctaacgtagaaaaaata
acgacaagatttttacgttgcggcgtaaaaccagaacaaattggtgtaataacaccttac
gaaggtcaaagggcatacttggttcaatacatgcaatatcaaggttcgctgcattctaaa
ttatatcaagaaatagaagtcgcaagtgtcgatgcttttcaaggacgcgaaaaggatata
ataattatgtcttgcgtaagatcgaatgaacatcagggtataggatttttaaacgatcca
agaagattaaacgttgcattgactcgtgcaaaatatggtattattatcgtaggaaatcca
aaagtactttcaaaacaaccactttggaatcatttgttgagcttttacaaggaacagaag
gtccttgtagagggcccattgaataatttgaaagaatctatgatacaatttgctaaacca
aaaaagcttgttaatgcggcaaatccaggatcacactttatgacgacatctatgtacgat
gccagagaggttttgattcctggttctgtttacgatcgttccggtaatcaggttaacgga
actcaaaatcacaatccgtattatcagagaaacgtgcctctggatattttcagtagaact
cacgataccataagttacataagccctgaaagagcacaggccgccatgaataatgtacca
gtcccagttggtatgtttatgaacatggcccatgtaccaccgcgtttttataatcaacat
caacaggctctacaagcaagacaaaatcaacgaaatagacgtggcactcccgcatctaaa
aataaatctggtgcgcgtatgggtaagctaagtcaaaccgaacaaaacacacaaccatac
agccaaccaggattaccattgactcaagggacaactcagggtatgtctcagccaggattc
agtctttctcagcctggattaagccaggctgaactttcacaggattccttcgcggttggg
gaatttcaatcacaaatggacggcctgctgtcccaagattcgacttatcaaggtgataga
agtggtttttatcaatctggtcagtcacaagccgggggacaattctcccagccatactga
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integrated database retrieval system
