Vespa crabro (European hornet): 124430405
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Entry
124430405 CDS
T09462
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124430405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcrb03019
]
124430405
03041 Spliceosome [BR:
vcrb03041
]
124430405
Messenger RNA biogenesis [BR:
vcrb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124430405
Spliceosome [BR:
vcrb03041
]
Complex B
Other components
Prp19-related factors
124430405
Complex C
124430405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_12
TPR_15
ARM_TT21_C
PPR
NRDE-2
Mad3_BUB1_I
DHR-2_Lobe_A
TPR_10
Microp_apicomplexa_6
ATG1-like_MIT2
SNAP
Motif
Other DBs
NCBI-GeneID:
124430405
NCBI-ProteinID:
XP_046832889
LinkDB
All DBs
Position
18:complement(4700109..4704308)
Genome browser
AA seq
848 aa
AA seq
DB search
MIERKDTEGNLYTFYDEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSNNLNMVYERALTE
LPGSYKLWYNYLRHRLSQLKKRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCILMTKQ
CYITRTRQVFDRSLRALPITQHHRIWPLYIDFLKKHNVYETSVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAIKLAQIVNQDDFVSKHGKSNHQLWNELCNLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKCIEDETVISTEEGNLELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENSQIADARVIFERATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATAMPFRKVSYHDENETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDVWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPNKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVSSNFWKVWKEFEVQHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNVSNQVSGVQIDSMRALDNKISDTTTQSGLKDTIKFV
RGITETDGKESSRVNNPDEIDIDMDMDDDNENEGEEEIEEEMSIEKQVIPSQVFGSLKTA
DNDTNEDE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacgaaaagatactgaaggaaatttatatactttttacgatgaagatttacct
tatgaagaggaaatcttacgaaatccatattccgtaaaacattggcagcgttatatcgat
catttgaaaaatacaaaaagtaataacttaaatatggtttatgaacgtgccttgacagaa
ctccctggaagttacaaattatggtataattatcttcgacaccgattaagccaattaaaa
aaaagatgtataacagatcctctttatgaagatgtaaataatgcatttgaaagagctttg
gtatttatgcataaaatgccacgtatttggatggattattgtatactaatgacaaaacaa
tgctacataacgcgtactcgtcaagtatttgatcgttctcttagagcacttccaattaca
cagcatcatcgtatatggccactttacatagactttttgaagaaacataatgtttacgaa
acatctgtcagagtattcaggcgatatttgaagttggcacctgaggacacagaggaatat
attgaatatttaatatctattggaaggcttgatgaagcagctataaaacttgcacaaatt
gttaatcaggatgattttgtatcaaaacatggaaaatctaatcatcaattatggaatgaa
ttgtgcaatttgatatcaaaaaatccttccaaaataaaatctcttaacgtagatgctatt
atcagaggtggtttaaggagatacaccgatcagttaggtccattatggaactcattagct
gattattatgttcgcagtggtctctttgagagggcaagagatatttatgaagaagctata
caaacagtaactactgttagagactttacgcaagtctttgatgcatatgcacaatttgaa
gaattaagtcttagtaaatgtatagaagatgaaaccgttatttcaacagaggagggtaat
ttagaattagagttacgtctcgcaagatttgaacatcttatggaaaggagattgttatta
cttaattcggtattattaagacaaaatcctcataacgtacaggagtggcataagagagta
aaactttatgaagggcagccgcacgagataattaatacatatacggaagcagtacaaact
gtgcaaccacaattagcagtaggcaagttacatactttgtgggttgcatttggcaagttt
tatgaagaaaatagtcaaatagcagatgccagagttatatttgaaagagctactcatgtc
ccctatactaaggtagatgatctagcatcagtatggtgtgaatgggcagaaatggagatc
agacatggaaattgtaaagaggctttaaaacttatgcatcgtgctacggccatgccgttc
cgtaaagtttcatatcacgatgaaaatgaaactgttcaaatgagattgtataaatcttta
aaagtgtggtccatgtatgcagatttagaagaaagttttggtacattcaagacatgcaag
gcagtatatgataaaataatagatttaaaaatagcaacacctcaaatcattattaactat
ggattgttcttggaagagaataattacttcgaggaagcttttagggcatatgaaaaagga
atcgcgctctttaaatggcctaatgtatatgatgtatggaatacatatctcaccaaattt
ttgaaacgttatggtggaacaaagttggagcgtacacgtgatttattcgagcaatgttta
gaacactgtccaaataaatacgccaaagcgttatatttattgtatgcaaaattggaagaa
gagcatggtttagctaggcacgcaatgtccgtgtatgaacgagcgactagtgcagtttta
cccgaagaaagattcgaaatgtttaacatatatataaagaaagcagcagatatttatggt
gtgccaaaaactagacaaatatacgaaaaggctattgaagttttaaatgatgaaaataca
agagaaatgtgtttaagatttgctgaaatggaaacaaaattaggagaagtagatagggca
agagctatttatgcacattgtagtcaaatatgtgatcctagggtatcatcgaacttttgg
aaagtgtggaaggaatttgaagtacagcatggaaatgaagatacgatgcgtgaaatgctt
agaatcaaacgtagtgtgcaagccatgtataatacccaagtgaatatgatgtctgctcaa
atgttgaataatgtatctaatcaagtgtctggtgtacaaattgatagtatgcgtgcgcta
gataataaaatctctgacacgactactcaatctggattgaaggatactattaaatttgta
cgtggtataacagaaacagatggaaaagaatcatcacgtgtaaataatccagatgaaatt
gatattgatatggatatggatgatgataatgagaatgaaggagaagaagagattgaagaa
gaaatgtctattgaaaaacaagtcattccatcgcaagtatttggtagcttaaaaacagca
gacaatgacacaaacgaagatgagtga
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