Vibrio cholerae O1 El Tor MS6: MS6_0064
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Entry
MS6_0064 CDS
T03666
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Pathway
vcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS6_0064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcs03019
]
MS6_0064
03400 DNA repair and recombination proteins [BR:
vcs03400
]
MS6_0064
Enzymes [BR:
vcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MS6_0064
Messenger RNA biogenesis [BR:
vcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MS6_0064
DNA repair and recombination proteins [BR:
vcs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MS6_0064
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BAP01719
LinkDB
All DBs
Position
1:80521..82383
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AA seq
620 aa
AA seq
DB search
MTLTLHSIDMTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMP
TGGGKSLCYQIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIY
NRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQL
KQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVI
RYLETQRGQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQ
IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWL
RRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPK
RFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDY
WVSIFRQLIHKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLS
GKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRK
LEKYADPFLDLIQEHLTYHG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgactcttactttgcactctatcgatatgaccgcgactttaatggctgaatcttctgct
ctctttgccactcctgaacgtgttttgcacgaggtgtttggctatcagcaatttcgcgtc
ggtcagcaagaggtgattgaggcggcgctggctgggcgtgatagcttggtcattatgccg
actggcggtggtaaatcgctctgttaccagatccctgcactggtgctggaaggggtcacg
ttagtgatttctcccctgatttcgctgatgaaagatcaggttgaccagcttaaagccaac
ggtgtcgccgccgagtgtgtcaattccaccttggcgcgcgaggaactgatcgcgatttat
aaccgcatgcatgctggccagctcaagctgctgtatgtgtcgccagagcgggtattgacc
gccgagtttatcgaacggctcagccatctgccgttagccatgattgcggttgatgaagcg
cactgtatttcgcaatggggacacgattttcgtcctgaatacgcctcattaggccagctt
aagcagcgtttcccgaatgtgccagtgatggcgctgacggcgactgcggatgacgcgacc
cgtcacgatatcatgcagcgtttgcagctcaatgagccgcatcagtatctgggcagcttt
gatcgcccgaacattcgctacatgctggtggaaaaacataagccggtttcacaagtgatt
cgttatctggaaactcagcgcgggcagtgcggcatcatctattgtggcagccgtaaaaaa
gtggaaatgctcactgaaaagctgtgcggcaaccacattcgcgccgccagttaccatgca
gggatggatgccgatgagcgcgcttgggtgcaagaagcgtttcagcgtgatgacctgcaa
attgtggtggcgaccgtggcgtttggcatggggataaataaacccaatgtgcgctttgtg
gtgcattttgatattccacgcaacattgaatcctactatcaggaaactggccgcgcaggg
cgtgatggtctgcctgctgaagccatgatgttgtatgaccccgccgacatgaactggctg
cgccgcatgctggatgaaaagcccgatggcgcgcaaaaacaggttgaaagccacaagctc
accgccatgggcgcgtttgctgaagcgcaaacttgtcgccgccaagtgttgctcaattat
tttggcgaatatcgcgataagccatgtggtaactgcgatatctgcctcgacccgcccaag
cgttttgatgccactgaagaggcacgcaaagccttgtcgtgtgtctatcgcgtcaatcaa
aacttcgggattggttatgtggtggaagtgctgcgcgggatgcagaacatccgtattcgc
gagcatggccacgacaaaatcaccacctacggcatcggccgcgatcacagccacgattac
tgggtgagtattttccgccaactgatccacaaaggcatgctctaccaaaacatcacgcgt
aactcgacattgcaactgaccgaagaagcgcgccctttgctgcgcggtgaaatgaatatt
gagctggcggtaccgcgtttagataccgcggcgcgcgcggcgaaatctgacaaattgtcg
ggcaaaaactacgacaaaaagctgtttgccaaactgcgtaagctgcgtaaatcgatcgct
gatgacgaagggttaccaccgtatgtggtgttcagtgacgccaccttgattgatatggcg
gagatcatgccgacctcttatggcgaaatgttggcggtgaatggggttggccagcgcaag
ctggaaaaatacgccgacccgtttttggatctgattcaggagcatttgacctatcatggc
tga
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