Vibrio cholerae O1 El Tor MS6: MS6_1157
Help
Entry
MS6_1157 CDS
T03666
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcs03019
]
MS6_1157
Enzymes [BR:
vcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MS6_1157
Messenger RNA biogenesis [BR:
vcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MS6_1157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
NACHT
AAA_30
ABC_tran
SLFN-g3_helicase
RsgA_GTPase
AAA_23
Zeta_toxin
NTPase_1
TsaE
PhoH
AAA_7
LYTB
Motif
Other DBs
NCBI-ProteinID:
BAP02812
LinkDB
All DBs
Position
1:1322296..1326225
Genome browser
AA seq
1309 aa
AA seq
DB search
MTSSQPTPDSAAQPKANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEI
ALDIVQSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQL
PKICAELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQI
KLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSA
TIDPERFSKHFSNAPIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEG
LGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATN
VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICI
RLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL
EELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD
PRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYL
RVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARN
ARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLIKRSYSEPHW
SKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQN
RALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLS
FEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPH
GFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRR
MTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVAD
DDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAG
QRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVW
EPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQI
EGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLN
KIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRIINAIEAC
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagcccacacccgattcggcagctcagccaaaagccaatagcgctgcc
agtttaaaaaaggcgctcggagagtgcttgatcaaagatcgttttcgtttcagtaaacgc
attgatggtgccagtaaaattaaaaatgaatcggcacgcaacgcagtatttgacgaaatc
gcgctcgatattgtgcaatccatgatggtggttgagcagcgtaaacagcagatgcccaaa
atcgagtatcctgcgctgctgccagtcagccaaaaacgtgatgatattgcgcaggcgatt
gctcatcatcaagtggtgatcgtggccggtgaaaccggttcaggcaaaaccactcagcta
ccgaaaatttgcgcagaattaggccgtggtaaatacggtttgattggccacactcagccg
cgccgtcttgctgcgcgatcagtggcaaaccgcattgccgaagagatggaaaccgaactt
ggtggctttgtgggctataaagttcgctttaccgatcaaatctcggatcagactcaaatc
aaattgatgactgacggtatcttgctggcggagatccaaaacgatcgtttccttaaccag
tacgacaccatcattattgatgaagcgcacgagcgcagtctcaacatcgactttatcttg
ggctatctcaagcagcttttgccgcgtcgtcccgatctcaaagtcatcatcacctcggcg
accatcgaccctgagcgcttctcgaagcattttagcaatgcgccgatcatcgaagtctca
ggccgtacttatccggtggaagtgcgctatcgccctctggcgggggatgatgacagcgaa
agcgatcgcgaccaactggaaggcattttccaagcggtggatgagctgtgcgatgaaggg
ctgggcgacattctgatcttcatgaacggtgagcgcgaaattcgtgataccgcggatgcg
ctctcaaagcgcaatctgcgtgatacggaaattgtgccactgtatgcgcgtttgtcagcc
ggtgagcagaacaagattttccaacctcatgcgggtcgtcgcattgtgctggccaccaac
gtggcggaaacctcgctaacggttccgggcatcaaatacgttatcgacccaggtaccgcg
cggatcagtcgttacagctatcgcaccaaagtgcagcgtttgccgattgagccgatttcc
caagccagcgctaaccagcgtaaaggccgctgtggacgtaccgaagaggggatctgtatc
cgcctctattcggaagaggatttcttgtcacgccctgagtttactgaccctgagattctg
cgcaccaacttagcctcggttattttgcagatgacggcattggggctaggcgatattgaa
gccttcccctttgtggaagcgccagataagcgcaacattcaagatggcgtgcgtctgctc
gaagagttaggggcgatcaacgatcaaatcaaagacccgaaaaaacgcctcaccgaaagt
ggtaagcagctagcgcgtttgccgattgatccacgtttggcacgcatggtgctcgaagcg
tctaaattaggttgtttgaaagaagtgatgattattgcttccgcgttgtcgattcaagat
ccgcgtgaaagaccgagcgacaaacagcaatcggccgatgacaaacatcgccgttttaac
catgaagattcggatttcctgacgttagtgaacctttggcactacattggccagcagcaa
aaagcgttgaccagtaaccagttccgccgtcagtgtaaactcgactacctgaactatttg
cgcgtgcgcgaatggcaggatgtgtacactcaactgcatcaatcgactcgggaaatgggc
ttcaagctcaatgatgaaccgggcagttaccatgcggtgcacagtgcgatcttggtcggt
ttgctgtcgcacatcggtatgaaagatcaggagaagaacgagtaccacggcgcacgtaac
gcacgtttcaacattttccctgcctctggcttatttaaaaagcagccgaaatgggtcatg
tcggcagagctggtggaaacctccaaactgtgggcgcgcgtggtcgcgaaaatcgaaccg
gattggattgagccactggcgaaacacctgatcaaacggagttacagtgagccacattgg
tcgaagaaaaatgcggcggtgatggcgtatgaaaaagtgatgttgtacggcatcccgatt
gtgccgaaacgcttggtcaactatggcacgattgatcctgtgctcagccgcgaaattttc
attcgtagcgcgctggttgaaggggattgggaaaccaaacacgccttcttcaaacaaaac
cgcgcgttgctcgccgaagtggaagagttagaacacaaatcgcgtcgccgcgatattctg
gttgatgacgaagagctgttccaattctacgaccaacgtgtcggcaccgaagtggtgtct
ggtcgccattttgatgcgtggtggaaaaccgccagccgtaaaacgccggatctgctcagt
tttgaaaaagagatgctgttcaaaggcgatgccagccacattaccgatctggattacccg
aatttctggcatcaaggcaatttgaaactcaaactcagttaccagtttgagccgggcgag
aacagtgacggtgtgacggtacacattccgctgccaatcttaaaccaagttgagccacat
ggctttgactggcagattcccggtttgcgccatgagttggtggtgagcttaattaaatcg
ctgccgaaaacgctgcgtaaaaactttgtgccagcccccaattacgctgacgcttttttg
gcgcgagtaacaccgtttgaaatgccgttgctcgatgcaatggaaaaagagctgcgccgc
atgacgggtgtgacggtgctgcgtgaagattggaaactcgatcaactgcctgcgcattta
aaaattacttatcgcgcggtggatcatcgcaatcgcaagctcaatgaaagctgcgatctg
catgagctgaaagagagcttgaaagagaaagtgcaagagacactttcgcaagtcgccgat
gatgatatcgagcagcgcgatctgcatacgtggtcgtttggtgagctaccgaaagtgtac
cagcaaaagcgtggtggctttgaagtcagagcttatccggcgttagtcgataagaaagac
agcgtcgaaatcaaactgtttgaaaccgagcaagagcagcttagcgcgatgcgtgccggt
cagcgccgtttgattttgcttaacgtgccatcaccgatcaaatatctgcacgccaatttg
ccgaacaaatctaaactcggtttgtactttaacccgtatggcaaagtgctggatttgatt
gatgactgcattgcctgcggtgttgataagctgattgaagagcgcggcggcatggtgtgg
gagccacaagcatttgaagcgctcaaagagcatgtgcgtgccgagcttggcgatacggta
gttgagattgccaagcaggtagaaaccattttgaccaccgcttacaacatcaataagcgt
ttgaaaggtaaggtggatttcacgatggcgtttgcgctttcggatgtcaaagcacaaatc
gaagggctgattttcagcggctttgcgactgagtgtggttggaaacgtctgccggacatt
ctgcgttacatgcgcgcgattgaacgccggatggaaaaactgccggtcgatcccaacaaa
gatcgtctgcatatgctgaaaattgaatcggtagccaacaagtataaagagctgctgaac
aagatcccgaaagggatggcgattcccgataatgtgcgagaaatccgctggatgctcgaa
gagttacgcgtgagttattttgctcagcagttgggtacgccgtatccggtttcggataaa
cggatcatcaacgcgattgaggcttgttag
DBGET
integrated database retrieval system
