Vibrio cholerae O1 El Tor MS6: MS6_1740
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Entry
MS6_1740 CDS
T03666
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcs03016
]
MS6_1740
Enzymes [BR:
vcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MS6_1740
Transfer RNA biogenesis [BR:
vcs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MS6_1740
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAP03395
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All DBs
Position
1:complement(1991249..1992370)
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AA seq
373 aa
AA seq
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MNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL
DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA
LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL
QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK
ETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIMEY
PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRL
PLLGEKLNTLVLK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcaaattattagccaagtaggcgatctacaacgagtctgtcttgctgcccgt
gatgcggatgtggtgatgctggataccgaatttgtccgtacccgcaccttctttccgcaa
ctggggttgatccagatgtttgatggggaaaacctatcgctgattgatcccaccgtgctg
gatgaaatgacgccgtttgtcgagttattgcaagacacttcggtattgaaagtgctgcac
gcctgtggcgaagatttggaagtgttccagaatgcgtttggctgcacgcctttccctatg
gtggatactcagattatggccgcgtttttgggctacggtttatccactgggtttgcggcg
ttagtgcaagaccaactgcaagttgagctagacaaaagcgaatcgcgcaccgattggtta
gcgcgccctctaagtgacaagcaactggaatatgccgcggccgatgtgttctatctgcta
ccgatgtacgaaaaactggtcgagcaagtgacccaagccggctggtgggacgcggcattg
caagaaagtgaactgcaagtggccaagcgcactaaagtcagcaacccagagctcgcttac
ttagacatcaaaggggcttggcagcttaaacctaaagagctggcgatcctcaaaccccta
gcaacatggcgttaccatgaagcggtaaatcgagatttggcgctgaacttcgtgattaaa
gaaacggacttactgaccatttcgcgtttggcacttcgtagtccgaaacgcatggaagag
gagggggttgatccgcacgcaatccgtcgtcacagcagcaaaattatcgctatggtgaaa
acggcgctagaaacgccagccgatgcgtatccaccagaaatcgtgccgatcatggaatac
ccaggttataagcagttgttcaaacgtttgaaagatgaagtaaagagcgtttcgaacacc
agtggccttgcgaccgaatttttggcgtcgaaaaaacagcttaaccaactgctgagttgg
gtatggaagcgcgaccgcgacccagcccgcttgcctgatttaatgcaagggtggcgttta
ccattacttggcgagaagctcaatacgctcgtcttgaaataa
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