Vibrio cholerae O1 El Tor MS6: MS6_2233
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Entry
MS6_2233 CDS
T03666
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcs03021
]
MS6_2233
Transcription machinery [BR:
vcs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
MS6_2233
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
NAT10_TcmA_helicase
AAA_22
WWE
AtoS_N
Motif
Other DBs
NCBI-ProteinID:
BAP03888
LinkDB
All DBs
Position
1:complement(2553683..2556592)
Genome browser
AA seq
969 aa
AA seq
DB search
MSFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDV
VDSQQGWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQI
DRMDNFVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLFIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFS
EADNPFETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIE
ALAEQTPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALF
SGEKLSDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE
GEESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGG
GEELEVIIEESAKLNKILKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTFA
LSLFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPVS
PIRILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASEAAVEPRV
SAIREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDS
LRLIVVAHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgctttagggcaacgctggataagcgatacggaaagtgatctcgggttaggt
actgtggtggcgcttgatgcgcgtacagtgaccttgatgtttgcagcatcggaagaaaat
cgtgtgtatgcacgttcagatgcgccggtcacccgtgtgatcttcaatgtcggcgatgtg
gtggatagtcagcaaggctggtcgttacaagttgaacaagtggtggaagaccaaggcgtc
tacacctatctaggtacgcgagtggataccgaagaaagcggtgtcgcgctgcgtgaaatt
ttcctcagtaaccaaattcgttttaataaaccgcaggataagttgtttgccggtcaaatc
gatcgcatggacaacttcgtgctgcgttatcgcgctcttaccaatcaatatcaacagcac
aaaagcccaatgcgtggcttgtgtggtatgcgcgctgggctgatcccgcatcagctgttc
atcgcccatgaagtaggtcgtcgtcatgcgccacgcgtattgttagccgatgaagtaggt
ttgggtaaaaccatcgaagcgggcatgatcatccatcagcaagtgctgaccgggcgtgcc
gagcgcatcctgattgtggttcctgaaacgctgcaacaccaatggttggtggaaatgatg
cgccgtttcaacctgcacttttcgatttttgatgaagagcgctgtgtggaagcctttagc
gaggccgataacccatttgaaactcagcagtatgtactgtgttcactcgatttcttgcgt
aaaagccgccagcgttttgaacaagccttggaagcggaatgggatttgttggtcgtcgat
gaagctcaccatcttgagtggcacccagaaaagccaagccgcgaatatcaagtgattgaa
gctctggccgaacagactccgggcgtactgctattgacggcaacgcctgagcagttaggt
cgtgaaagccactttgctcgtctgcgcctgctggatgcagatcgtttctacgattacgaa
gcctttgttaaagaagaagagcaatacgcaccggttgcggatgccgtcactgcgctgttc
agcggtgagaagctgagtgatgaagcgaaaaacaaaatcactgagcttctgtctgagcaa
gatgtggagccgctgtttaaagcgttggaaagccacgccagcgaggacgaaattgctttg
gcgcgccaagagctgatcgacaatctgatggatcgccatggtactgggcgtgtgttgttc
cgtaacacgcgtgcggcaatcaaaggcttcccagtgcgtaatgtgcatttgctgccattg
gagattccttctcaatacaccacgtcaatgcgtgttgcgggcatgctcggcggtaaactg
acgccagaagcgcgcgcgatgaaaatgctctacccagaagagattttccaagagtttgaa
ggcgaggagtcaagctggtggcaatttgactcacgcgtcaactggctgctcgaaaaagtc
aaagccaaacgcagcgagaagatcctcgtcatcgcatcacgtgccagtaccgccttgcag
ctagagcaggcactgcgtgagcgtgaaggcattcgtgcaacggtattccatgaaggcatg
tcgatcattgagcgcgataaagccgcggcttattttgcccaagaagagggcggcgcgcag
gtgctgatctgtagtgaaattggctctgaaggtcgtaacttccagtttgctaaccagttg
gtgatgttcgatctgccgttcaacccagacttgctggagcagcgtatcgggcgtttggat
cgtatcggccaaaaacgtgatatcgatgtgtacgtgccatatctgaccgaaacgtcacaa
gcgattttggcgcgttggtttcaagaaggtttgaatgcctttgcggaaacctgcccaacc
ggtcgtgcggtgtatgatgccttcgctgagcgtttgatccccattctggccgccggtggc
ggtgaagagttggaagtgatcatcgaagagtcagccaagctcaacaaaatactgaaatcg
cagctggaagtggggcgtgatcgcttgctggaaatgcattcgaacggtggcgaaaaggca
cagcagattgctgagcagatcgcgaaaaccgatggcgataccaatctggtgacgtttgct
ttgagcctgtttgatgcgattggtctgcatcaagaagatcgtggtgagaatgctctagtg
gtcactcctgcagaacacatgatggtgccaagctatccgggtctcccttatgaaggagcc
accattacctttgatcgtgacaccgcactgtcgcgtgaagatatgcacttcatcagttgg
gaacaccccatggtgcaaggtggcattgatttgctgatgagtgaaggggtgggcacttgc
gcggtgtcgctgttgaaaaacaaagcactgccagtgggtaccatcttgctggaactggtg
tatgtggtggatgcccaagcgccgaaacgcagtggcatcagccgcttcttgcctgtctcg
ccaatccgaattctgatggatgcgcgcggtaatgatctctcttcgcaagtggagtttgaa
agctttaaccgtcagctcagccctgtgaatcgtcatttggccagcaaactggtgagttca
gtacagcatgatgttcatcgtttgattacggcaagcgaagcggcggttgaaccacgagtg
agcgcgattcgtgaacaagcgcagcgtgatatgcagcagagccttaacagcgagttggag
cgtttgctggcactcaaagcggttaacccgaacattcgtgatgaagagatcgaagtgctg
gatcagcaaatcaaagagctgactggctatattgcgcaggcgcagtatcagctggattca
ctgcgtttgattgtggtggcacacaactga
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integrated database retrieval system
