Vibrio cholerae O1 El Tor MS6: MS6_2293
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Entry
MS6_2293 CDS
T03666
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Pathway
vcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MS6_2293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcs03021
]
MS6_2293
03400 DNA repair and recombination proteins [BR:
vcs03400
]
MS6_2293
Enzymes [BR:
vcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MS6_2293
Transcription machinery [BR:
vcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MS6_2293
DNA repair and recombination proteins [BR:
vcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MS6_2293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BAP03948
LinkDB
All DBs
Position
1:complement(2611806..2612798)
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AA seq
330 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG
DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP
VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV
PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
LTEIKDVLASRGLSLGMRLENWPPASIAED
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagaatttcttaagccacgtcttgttgatatcgaacaaatcagc
acgacacacgcaaaagtaactcttgagccgttagagcgtggtttcggccatactctgggt
aatgcacttcgccgtattcttctatcttcaatgccaggttgtgctgtgactgaagtagag
attgaaggcgttcttcacgagtacagcaccaaagaaggtgttcaggaagatatccttgag
attctcttgaacctgaaaggtctggctgttcgcgttgccgaaggcaaagatgaagtgttc
attacactgaacaaatcaggctcgggccctgtggttgcaggtgacatcacccatgacggt
gatgtagagatcgtaaaccctgaacacgttatttgtcatttaacttctgacaatgctgcg
atcgctatgcgtatcaaagtagaacgtggtcgtggttatgttccagcttctgcccgtatc
catactgaagaagatgagcgtccaattggtcgtttgcttgttgacgcgactttcagccca
gtagacaaaattgcctactctgttgaagcagctcgtgttgaacagcgtactgacttggac
aagcttgttatcgatatggaaactaacggtactcttgagcctgaggaagcaatccgtcgc
gcagcaacaattcttgctgagcaattggatgcgttcgtagatcttcgtgatgtacgtgta
cctgaggagaaggaagagaagccagaattcgatccgatcctactgcgtcctgtagacgat
cttgaactaacagttcgctctgctaactgtctgaaagcagaagcgattcactacatcggt
gatctggtacagcgcactgaggttgagcttcttaaaacgccaaacctcggtaagaagtct
cttacagagattaaagacgtgcttgcatcacgtggtctgtctctgggcatgcgtctagaa
aactggccaccagcgtcaatcgctgaagattaa
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