Vibrio cholerae O1 El Tor MS6: MS6_A0847
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Entry
MS6_A0847 CDS
T03666
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Pathway
vcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS6_A0847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcs03019
]
MS6_A0847
03009 Ribosome biogenesis [BR:
vcs03009
]
MS6_A0847
Enzymes [BR:
vcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MS6_A0847
Messenger RNA biogenesis [BR:
vcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MS6_A0847
Ribosome biogenesis [BR:
vcs03009
]
Prokaryotic type
rRNA helicases
MS6_A0847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAP05106
LinkDB
All DBs
Position
2:complement(757821..759752)
Genome browser
AA seq
643 aa
AA seq
DB search
MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT
LAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENH
DWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSK
LRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREG
GRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRREEA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaccgaaatgggcttcgtatcaccaactcctatccaagcagcagcgattcctgttctg
cttgaaggccgtgatgcactgggtaaagcgcaaacaggtacaggtaaaacagcggcattc
tctttgcctctgctcaacaaacttaatctatctcagtacaagccacaagctatcgttatg
gcgccaacacgtgagctggcgattcaggtagcagccgagatcaaaaacctaggccaaaat
atcaaaggcctcaaggttcttgagatctacggtggtgcttcaattcttgatcaaatgcgc
gctctgaaatctggcgctcacattgttgtgggtactccaggccgcgtaaaagatctgatc
acgcgtgatcgtctacacctagacgaatgtcatactttcatcttggatgaagcagacgaa
atgctcaaaatgggcttcgttgatgacgtgacttggatcatggagcaagctccagaatca
gcacaacgcgtactgttctctgccactatgccgccaatggttaaagaaatcgttgagcgt
tttctacgtaatccagagtgtgttgacgtagccggttctaaccaaacggtcgcgaaagtt
gagcaacaatactgggtagtaaaaggtgtagagaaagatgaagcgatggctcgtctgctt
gaaaccgaagaaaccgatgcttctatcgtattcgtacgtactcgtcaggatactgagcgt
ctagcggattggctgtgcgcgcgtggcttcaaagcagcggctctgcacggtgatatccct
cagtctctgcgtgagcgtactgttgatcatatcaaacaaggtgtgattgatattctggtt
gcgaccgacgttgttgcacgtggtctggacgttcctcgtatcactcacgtatacaactac
gatattccatttgatgtggaatcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaatccgcatgctacgcactatc
gagcgtgtcactcgttcttcaatggaagagatccaactaccgcaccgcgataaagtggct
gaatctcgtctgactaagctgggtcaagaactggcagcagataaagagttcagctcgctg
gaacgtttcgctgatttggttgaaaaactgcaagcgtcactggaaatcgatgcaacgact
ctggctgcaatcctgctgaaacgtcagcaaggcaagcgtccactgttttatgtcggcgct
gatccaatgatcgaagcgatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgcgatggtgatcgtcctgctcgtcgtgaattcggtggccgcgatcaagaaaaccac
gattgggatacttaccaactgcaagttggccgtgaccaaggcgttcaagtgaaagacatc
gttggtgctctcgcaaacgaactgggtctgactaaaggttctatcggtgcgatcaaactg
gctcaaggccatacgtttgttcagctaccaaaagccatgtcaaatgacgtttctagcaag
ctacgtaagctgcgtattcgccagaaagaagtgggtgctgtagtgtgtgacttcgatgac
ttccgcgaatctcgtggtggtgctcgtcgtgaaggtggtccacgtcgcgaaggtggtcgt
cgtccagaaggcaaccgtgaaggcggtttccgtggtggtcgtgaaggcggccgcgaaggt
ggtcgtggccgtggtggcgaaggccgtcctttccgtgaaggtgagcgtcgttttgagcgc
aaccgtagtggtgagagcagtggtagctaccgtggtgagcgtggccatagccgtcgtcgc
gaagaagcataa
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