Vibrio coralliilyticus OCN014: JV59_00255
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Entry
JV59_00255 CDS
T03497
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JV59_00255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vct03021
]
JV59_00255
03400 DNA repair and recombination proteins [BR:
vct03400
]
JV59_00255
Enzymes [BR:
vct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JV59_00255
Transcription machinery [BR:
vct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JV59_00255
DNA repair and recombination proteins [BR:
vct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JV59_00255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIS53643
UniProt:
A0A097AUW6
LinkDB
All DBs
Position
1:49681..53886
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEIEEMREELQSTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLASPAEAEKAYRTK
SAELHARVKVRITETVKDEDGNSTTETKLVDTTIGRAMLWQIVPSGLPYSIVNQKLGKKQ
ISHLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPDAKYTEIEEAEAE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKLMMENLSSETVVNREGEDEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTDEVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVMNKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNDAVEAGETVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAAGNDVMIPGTEMPAHYFLPGKAIVNIEDGAEVGVGDTLSRIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRDGGDAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSTEFLVGEQVEYANVKIANRQLEAEGKELVRFERELLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQDRQAKRTEEQEGP
SAEQATDNLAALLNAGFSADE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagagtttgatgcaatc
aaaatcggtctatcttcaccagacatgattcgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgagcgtgatggtctgttctgtgcgcgt
atctttggtccagtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcactg
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgacggatctagaaaaatctcagatgctg
actgaagaagagtatctggatcgtctagaagagtggggtgatgaattcacggctaagatg
ggcgcggaagcgatcaaagacctacttgcgtctatggatctgcctgctgaaatcgaagaa
atgcgtgaagagcttcagtctactaactcagagactaagcgtaagaagatcactaaacgt
ctgaagctagtagaagcgttcgttcaatctggtaacaacccagagtggatgattctaact
gtgctaccggtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttc
gcgacttctgatctgaacgacctataccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgtctactagagcttgctgctccggacatcatcgtacgcaacgaaaagcgtatgctgcaa
gagtctgttgatgcccttctagataacggtcgtcgcggtcgtgcgatcacaggttcgaac
aaacgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggcccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctacagcaagcttgagactcgtggcctagcgacgacaatcaaagctgctaagaagatg
gttgagcgcgaagaagcagttgtttgggatatcctagacgaagttatccgcgaacaccca
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgattcagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgacaagattaacgtg
aaaggcgaaggtatgtaccttgctagcccagctgaagctgagaaagcataccgtactaag
tctgcagagctacacgctcgcgttaaagttcgtatcactgagacagtgaaagatgaagat
ggcaacagcacaacagagactaagctagttgatacaactatcggtcgtgcaatgctatgg
caaatcgtaccatctggtcttccgtacagcatcgttaaccagaagctaggtaagaagcaa
atctctcacctacttaacgaggcgtaccgtaagctaggtctgaaagacacagttatcttc
gctgaccaaatcatgtacacaggttttgcttacgcagcactttctggtgtatcggttggt
atcgacgacatggttgtgccagatgcgaaatacactgagatcgaagaagcggaagcagaa
gttcgcgaaattcaagaacagtaccaatctggtcttgtaactgcgggtgagcgctacaac
aaagtgatcgatatttgggcttcaaccaatgatcgcgtagcgaagttgatgatggaaaac
ctttcatctgaaacggtagtgaaccgtgaaggtgaagatgagcaacaagaatcgttcaac
agcatctacatgatggctgactcgggcgctcgtggttctgctgctcagattcgtcagctt
gcaggtatgcgtggtctgatggcacgtccagatggttcaatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttatctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtacacgagcatgactgtggcacgcacgaaggtatc
gacatgatgcctcacattgaaggtggtgacgttaaagttgcactttctgagcttgctcta
ggtcgtgttgttgcagaagacgttctgaaaccaggtactgacgaagtactgatcccacgt
aatactctgattgatgagaagtggtgtcagatcatggaggataactcagtagatagcatg
aaagtgcgctctgtagttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtcggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagcgaagacaactggtacggttaagcta
cacaacgctaagttcgtaatgaacaaagataagaagcttgttatcacgtctcgtgcttct
gagctgactatcatcgacgaattcggtcgtacaaaagagaaacacaaactaccttacggt
tccctactaagcaaaggcgacaacgatgcggttgaagctggcgaaacagtagcgaactgg
gaagcgcacactatgccaatcatcactgaagtggcaggtcgcatccagtttgtggacatg
atcgatggcgtaacagtttctcgtcaaacagatgacctaacaggtctatcttcaagcgaa
gtaactgaagcagccgctcgcccagcagcaggtaaagatatgcgcccagctatcaaactt
gttgatgcagcgggtaacgacgtaatgatccctggtactgaaatgccagctcactacttc
ctacctggtaaagcgattgttaacatcgaagacggcgcagaagtaggtgtgggtgatacg
ctatctcgtattcctcagaaatctggcggtaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagccgaaagagcctgcgattcttgctgagcacaca
ggtactgtgagcttcggtaaagaaacgaaaggtaaacgtcgtctagtaatcactcgtgac
ggcggcgacgcttacgaagagatgattcctaagcatcgtcagcttaacgtattcgaaggc
gagaaagttgaacgtggtgacgtgatcgcagatggtccagagtctccacatgacattcta
cgtctacgtggtatccacgctgtgactcagtacatcgcgaacgaagttcaagaagtatac
cgtctacagggcgttaagattaacgataagcacattgagactatcgttcgtcagatgcta
cgtaagtgtacaatcactcacgctggtgactctacagagttcctagttggtgaacaggtt
gaatacgcgaacgttaagattgctaaccgtcagctagaagctgaaggcaaagagcttgtt
cgtttcgagcgtgagctacttggtattactaaggcatctctagcaactgaatcgttcatc
tctgcggcatcgttccaggagacaactcgcgtactaacagaagcagctgtttctggtaaa
cgtgatgagctacgtggtctgaaagaaaacgtaattgttggtcgtctaattccagcaggt
acaggtttcgcttaccaccaagatcgccaagctaagcgcactgaagaacaagaaggtcct
tcagctgagcaagcaactgacaatcttgcagcattgctaaacgcaggtttctctgctgac
gagtaa
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integrated database retrieval system
