Vibrio coralliilyticus OCN014: JV59_01555
Help
Entry
JV59_01555 CDS
T03497
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
vct
Vibrio coralliilyticus OCN014
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vct03019
]
JV59_01555
Enzymes [BR:
vct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JV59_01555
Messenger RNA biogenesis [BR:
vct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JV59_01555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_22
HA2_N
Motif
Other DBs
NCBI-ProteinID:
AIS53869
LinkDB
All DBs
Position
1:300221..302677
Genome browser
AA seq
818 aa
AA seq
DB search
MSQLPIESVMHELLSSVRTRSQVILKAAPGAGKSTYFPLQLLRENVVEGKIIMLEPRRLA
ARNIARYLAQQLGENVGQQVGYRVRGETKVGPDTKLEIVTEGIMTRMIQSDPELDGISLL
IFDEFHERSIHADTALAFSLEIQEAFREDLKLVAMSATLDQRALSQLMPDATYIESQGRS
FPVEYRYQPLKPNERLEEVMAKQIASLLSKESGSVLAFLPGVAAIKRVAERMSELPDNVE
VCPLYGQLSFAQQQTAIQPAPNGKRKVVLATNIAETSLTIEGIRLVVDAGLERVAKFDLK
SGVTKLDQSRIAQSSAEQRAGRAGRIEPGICLRLYSESQLNQQPEVPSAEILHSDLAALT
LELAQWGAADATELKWLDVPPQSSLNQSRRLLNKLGLLDDKHQLTEHGRLASEFGVEPRI
AAMLMHSEQQRWKNTASAVAALLEEPERNVLDFMHSIDRFKRGLHSKQKIVLQRGQALAR
KLSVNFSLEEVDESLVAVILATAFPDRIGQLRKGQAGKFLLANGHGAEMADDERLATAEY
LVVADLMRSHSDASRVFLAAELDITAIEKWLPHLIEEKESVDWDDNKGRLIAEHQRNLGR
LVIERRPLPEPDKQKITQALLNCVRRKGLGVLNWSTSSLETLERIRCAAEWLPEHQWPGV
SDAELLDNLEQWLEPYLVGVSSLKALAKVDLEPALMAYMAWPLSQEIDQWLPTHYIVPTG
SKKKIRYQFGQEPVLSVRMQEMFGEQRSPHIADGRKTLVVELLSPAQRPLQVTQDLASFW
AGAYKEVQKEMKGRYPKHVWPDDPANHMATTKIKRQLK
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagctgcctatcgagagcgtgatgcatgagctactctcaagcgtgcgaactcgt
tctcaagttatcctcaaagctgcgcctggtgccggcaaatccacctactttcctctgcaa
ttgcttcgtgagaatgttgttgaagggaaaatcatcatgctcgaacccagacgtcttgct
gcgcgtaacatcgctcgttatttggctcagcaactgggagaaaatgttggtcagcaggtg
ggttatagagtgcggggagaaaccaaagtaggcccagatacgaagttggagattgtgact
gagggcattatgacccgaatgatccagtcagatcctgaactcgatggtatctcattgcta
atttttgatgaatttcatgaacgtagcattcatgccgataccgcattggcattcagcctc
gagattcaagaagcatttcgtgaggatctaaagctggtggcgatgtcggcaacacttgat
cagcgagcgctgagccaactgatgccggatgcaacatatattgaatctcagggtcgcagt
tttcctgttgaatatcgctatcagccgctaaagcccaatgagcgattggaagaggtgatg
gccaagcaaattgcttcgctgctaagcaaagaatctggctctgttttggcttttttgccc
ggcgttgcggcaataaagcgtgttgctgagagaatgagtgagctaccggacaacgttgaa
gtgtgccctttgtacggacaacttagctttgctcagcaacaaacggcaattcagccagca
cccaacggtaaacgtaaggtggtgctggcgaccaatattgctgaaacgtcattaacgatc
gaaggcattcgtttggttgtggatgcagggttagagcgagtggcgaagtttgatttaaaa
agcggtgtgacaaaactggatcaaagtagaattgcgcaatcttcagccgagcaacgtgca
gggcgtgctgggcgtattgagccggggatttgcctgcgtctgtacagtgaaagccagttg
aatcagcaaccagaagtaccttcggcggaaattcttcactcagatttggctgcattaaca
ttagagttagcacagtggggcgcagcggatgccactgagctgaaatggctcgatgtccct
cctcagagtagcctgaatcaatctcgccgtttgctgaacaaattggggcttttagatgac
aaacaccagttaaccgaacatggtcggctggcaagcgagttcggtgttgaaccgcgaatc
gctgcgatgctgatgcactctgaacaacaacgctggaaaaatactgcctcggcggtggct
gctctgctagaggaacctgaacgtaacgtgcttgatttcatgcacagtattgatcgcttt
aagcgcggccttcacagcaaacagaaaatcgtgctgcagcgcggacaagctttggcgcgt
aagttatctgtgaacttttcgcttgaagaagttgatgaatctctagtcgcagtgattttg
gcgacggcttttccggaccgtattggccaactgagaaaagggcaggcgggtaagttctta
ttggcgaacggtcatggggctgaaatggccgatgacgaacgtctcgcgaccgctgagtat
ttggtggtggcggatttgatgcgtagccactctgatgcctcaagagtttttctcgccgcg
gaactggacatcactgcaatcgagaaatggcttcctcatttgattgaggagaaagaaagt
gtcgattgggacgacaacaaagggcgattgatagcagaacatcaacgtaaccttgggcga
ttggtgattgaacgtcgtccactccctgagccagataaacaaaaaattactcaggcttta
ctcaactgtgtccgtcgaaaaggcttgggcgtattaaactggtcaacaagcagtctagaa
accttagagcgtattcgctgcgcagctgaatggttaccagaacatcaatggcccggtgtt
tctgatgcagaattgttggacaatctagaacaatggttagagccttatctagttggagta
agttcacttaaagcgctagctaaagtggatttggagcctgccctaatggcttatatggct
tggccactcagtcaggaaatcgaccaatggttaccgacgcactacatcgtaccaacaggt
tcgaagaagaagatacgttatcaatttggtcaagagccggtactttcggtgcgaatgcag
gaaatgtttggcgaacagaggtcgcctcacatcgctgacgggcgtaaaaccttagtggtg
gaattactatccccagcacagcgaccgctgcaagtaacgcaggatttagctagcttttgg
gcgggagcatacaaagaagtgcaaaaagaaatgaaagggcgttatcccaagcacgtttgg
ccagacgatccggctaaccatatggcaacgaccaaaattaagcgacaactgaaataa
DBGET
integrated database retrieval system
