Vibrio coralliilyticus OCN014: JV59_02525
Help
Entry
JV59_02525 CDS
T03497
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03030
DNA replication
vct03430
Mismatch repair
vct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JV59_02525 (dnaE)
03430 Mismatch repair
JV59_02525 (dnaE)
03440 Homologous recombination
JV59_02525 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vct03032
]
JV59_02525 (dnaE)
03400 DNA repair and recombination proteins [BR:
vct03400
]
JV59_02525 (dnaE)
Enzymes [BR:
vct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JV59_02525 (dnaE)
DNA replication proteins [BR:
vct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JV59_02525 (dnaE)
DNA repair and recombination proteins [BR:
vct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JV59_02525 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AIS54050
LinkDB
All DBs
Position
1:535922..539401
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHGC
GVKPIIGADFAMQSEEFGEELTKLTVLAADNEGYKNLTLLISKAYLRGHVQHQPVIDKQW
LAELSAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFLELTRTGRADEET
YLHFALDFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDPRRPKNYSAQQYL
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVKKSEEGL
EERLEFLFPDEEERAKRRPEYDERLKIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALQITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHGSLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVDENGAIVYGIGAIKG
VGEGPIEAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPAWPEKVWLEGERDTLGLY
LTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEQDKILVVSGQVSFDDFNGGLKMSAREVMDLGTAREKYA
RGLSVSIEQSQIDDQFFERFSKILEPYKAGTVPVHIYYQRSDARARLTLGTEWRVTPSDE
LIDNLKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctaaatttattcacctaaaagttcacagtgacttttccatggtcgatggc
ctatcgaaagtgcctcctttggttaagaaagtggctgaaatgggaatgccggccatggca
ttaactgatttcaccaacttatgtggtttggtgaagttttatggaacggctcatgggtgt
ggcgtgaagccaattattggcgctgattttgcgatgcagtcagaagagtttggtgaagag
ttgactaaactcactgtgctggcagcagacaatgaagggtataaaaacctaaccttgctg
atctccaaagcgtatctgcgcggccatgttcagcatcaacctgttatcgataaacaatgg
ttagctgagttgtcggcagggctgattgttctatctggggcaaaaagtggagagattggt
aaagcgttactgaaggggaaccataaagttgctcaaaactgcgcggatttttatcatcaa
cactttgccgaccgatttttccttgaactgacgcgtacagggcgagcagatgaagaaact
tatcttcactttgccttggactttgcagagaaagagcaactgcctgttgttgctactaac
gatgtcgtgattttagatgaaacgacatttgaggcacatgagattcgagtagcgattcat
gatggttacacgctagaagatcctcgccgccctaaaaactacagtgctcagcaatattta
cgtagtgaagaagagatgtgtgagttgttcgccgacatccctgaagcgctggaaaatagt
gttgaaattgctaagcgttgtaatgtgacggtacgtttgggcgagtacttcctgcccgca
ttcccgacagaggggatggaggaaaccgaatttctggtcaaaaagtcagaggaaggcctt
gaagagcgattggaatttctgtttcccgacgaagaagagcgagcgaagcgacgtcctgag
tacgatgagcgtctaaaaatcgaattggaagttatcaataatatgggcttcccaggctac
ttcctgatcgtaatggagttcattcagtggtcgaaggataatgatattcctgttggacca
gggcgtggttcgggtgccggttcgttggtggcttatgcattgcaaattaccgaccttgac
ccgctggaatacgatctgctcttcgagcgcttcctcaacccagaacgtgtctccatgccc
gatttcgacgttgatttctgtatggataaacgagatcaagtgattgatcacgtagcagaa
atgtatggccgtgacgcggtttcccagatcatcactttcggtactatggccgcgaaagcg
gtaattcgtgacgtagggcgtgtactaggccacccatttggctttgttgaccgcatttct
aagcttgtaccgccagatccgggaatgactctggaaaaggcattcaaagcagaaccagcg
ctaccggaactgtacgaagctgacgaagaagtgaaagagcttatcgatatgtgccgcatc
cttgaagggtgtacacgtaacgccggtaagcacgcgggtggtgttgtaatctcgccaacc
accattactgacttcgcgccaatttatgccgatgcagaaggtcactttccggttactcag
ttcgataagaacgacgtagaaactgctggtctggtcaagtttgacttcttaggtctacgt
accttaaccatcatcgactgggctcttggtctgattaacccacgccttgagcgtgaaggc
aaagatccagttcgcatcgaatcgattccattggatgatgcggcatcattccgattgtta
caaaactcagaaacgaccgcggtattccagctcgaatcgcgcggtatgaaagaactgatc
aaacgcctgcaaccggactgttttgaagacatcatcgcattggtggcactgttccgcccg
gggccgctgcagtcgggcatggtagacaactttatcgaccgtaagcatggtcgagaagcg
atctcgtacccagatgaaaagtggcaacatggatcgctaaaagaaattcttgatccgact
tacggcattatcctctatcaggagcaggtaatgcagatcgcacaggtactgtctggctac
acccttggtggcgcggacatgcttcgtcgtgcgatgggtaagaaaaaaccagaggaaatg
gctaagcagcgtgcgaccttcgaagatggtgcggtaaagaacggcgtcgacggcgagttg
gcgatgaaaatcttcgacttggtagaaaagttcgcaggctacggtttcaacaaatcacac
tccgccgcctatgcattggtgtcttatcaaacactgtggctgaagatgcattacccagcc
gagttcatggctgcggtaatgaccgccgatatggacaacaccgaaaaagtggtcggtctg
gtagacgaatgtttccgtatgaagctcaaggtgcttccgccggatatcaacgctggcttg
taccgttttaacgtcgatgaaaacggtgcgatcgtatacggtattggggcgatcaagggg
gttggtgaaggtccgattgaagccattctagaagcgcgcaacaaagatggccactttaaa
gacttgttcgatttctgtgctcgtattgatcttaagaaagtgaacaagcgcgtgatagag
aagctcatttatgctggcgctcttgaccgacttggcccccaccgtgcggcgatgatggca
tcgcttaatgatgcggtaaaagctgccagccaataccaccaagcggaagcgtttggtcaa
agtgacttgtttggtgttttgaccgaagcgccggaagaagttgaacacaaatataccaag
gtacccgcgtggccagaaaaagtttggctggaaggagaacgtgatacacttggcttatat
ttgaccgggcacccaataaatgcctacataaaggaacttggtaagtacaccagttgtcga
ctaaaagatgcaacaccaacaagacgtgatcagagtgtcacggttgcaggtctggtgatt
gcggctcgagtgatgacaaccaagcgcggtactcgtattggtatcatgaccttggatgac
cgcagtggtcgcatggaagtcatgttgttctccgatgcgcttgatcgctatgctgaattg
ctcgaacaagacaaaattttggtcgtttctggacaggtcagctttgatgatttcaatggt
ggtcttaaaatgtccgcgcgcgaggttatggatctcggcacggcgcgtgaaaaatatgcc
cgtggcttatcggtatccattgaacaatctcaaattgatgatcaattttttgagcgcttt
agtaagatactagagccttacaaggcaggaacggttcctgtccatatatactaccaacgc
agtgacgcgcgagcgcgcttaacgttaggtaccgaatggcgtgtgacgcctagtgacgaa
ttaatagacaatttgaaacaactgcttggtaagagccaggtagaactcgaatttaactaa
DBGET
integrated database retrieval system
