Vibrio coralliilyticus OCN014: JV59_18800
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Entry
JV59_18800 CDS
T03497
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JV59_18800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vct03019
]
JV59_18800
Enzymes [BR:
vct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JV59_18800
Messenger RNA biogenesis [BR:
vct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JV59_18800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AIS57091
LinkDB
All DBs
Position
2:641459..642721
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AA seq
420 aa
AA seq
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MSSFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPL
LNKLLDQEASRDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQ
TQNLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLN
PERQTLFFSATFDKRIKTIAHKLMNEPVEVQVTPSNSTAETVKQMVYPVDKKRKAELLAY
LIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIRA
LIATDVAARGLDITQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLLE
AIERLLDARLPQEWLQGFEPSIEEPTENERERGGRRKSRTSEKRKMKAKLKIHANRGKKK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatttcaacatctgggcctgtctcaagcacttgcatctactgtagaaaaatta
ggttttgacacgccaacgcctattcaggagcaagccattcctcacgtacttgaaggaaaa
gatgtgctggcgggagctcagacaggaacagggaaaactgctgcctttggcttgccacta
ctcaacaagctacttgatcaggaagcgtcgagagatcctcaatcaaatgatgtcttagcc
ttggtggtcgttcctacacgtgagttggcgcagcaagtttttgacagcttaacggcttat
gcgagtgcggctgagattaaaattgtgaccgcttatggcggtaccagtatgaatgttcag
acacaaaatctgaggcagggttgtgacgtattgatcgccacaccaggacgtttactggac
cacctctactgcaaaaatattaaccttagaaaaaccagctatttggtactggatgaagcc
gatcgcatgttagatatgggattcatgccagatatccaacgcatattgaaaaagctcaac
cctgagcgtcagactctgtttttctcggcgacatttgataagcgtattaagactattgct
cataaattgatgaatgagccagtcgaggttcaggtaacgccatcaaatagtactgctgag
acggttaaacagatggtttatcctgtcgacaaaaagcgtaaagctgaacttcttgcctat
ttaattggttcacgaaactggcagcaggtgctcgtgttcacgaagactaagcagggcagc
gatgcgcttgcgaaagagcttaaacttgacggaatcaaagctgcgtcgatcaatggggat
aaaagccaaggtgcacgtcagaaagcattagacgattttaaatcgggcacaattagggca
ttgattgcaaccgatgtagcggcgagagggttggatattactcagctagagcaagtggtt
aactttgatatgccttacaaagccgaagactatgttcatcgtattggtcgtactggccga
gctggtcaggaaggtctggcggtatcgctgatgagtaaagacgaagaatacttgctcgaa
gcgatagaacgtcttcttgacgcgcgtttaccacaagagtggctacagggctttgaacca
agtattgaagagccaactgaaaatgaacgcgagcgtggtggaagacgaaaaagccgcact
tcggaaaaacgaaagatgaaagcgaagctcaagattcatgcgaatagaggcaagaagaag
tag
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