Vibrio coralliilyticus OCN014: JV59_34535
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Entry
JV59_34535 CDS
T03497
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JV59_34535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vct03019
]
JV59_34535
03009 Ribosome biogenesis [BR:
vct03009
]
JV59_34535
Enzymes [BR:
vct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JV59_34535
Messenger RNA biogenesis [BR:
vct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JV59_34535
Ribosome biogenesis [BR:
vct03009
]
Prokaryotic type
rRNA processing factors
JV59_34535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIU67398
LinkDB
All DBs
Position
1:2218641..2221568
Genome browser
AA seq
975 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALDTLDLPKGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDANPAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
LEHIQLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSINHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPKKLESMKEAEGREVVEPEVKPKKLEEPALKGFAAPAQSA
PAPKPPTKKAPEKKSEPREEKPGLVSRFFKALGSLFSSEPEKEQVEEKQEKAAKKDGQRN
NRNRRNRNDQRRRNSRDNRNENREDKRDNKRNKPQRERDEAANENKAASNERKQQNRKPK
QDRRNKQRDDAKASKVAEEGLKLAAEAQKDDKPNRAEEKTTKVKERRQRRKLNKQVRVKD
QKAKAEAVEEVKQVKAEAVAEAIEQSTEEIAAEDAEQPKQRRNRRSPRHLRASGQRRRRG
RDRRPNPFRLRKGGVASPEMAMGKVMPSYGISKPEPKHKAKAEQAAAPEVVTQALGGFAC
PEMAMGKVIVRRQEPVIEEPKVVEQAATVEATPVKTPAPKAVESQVAPEPVADTAAIVEA
EAAPAPVNTSSEIIVPTAFKGHASAPMAKAPGTTEMKEITVIAAPFREERYLSKGAGSQV
ASNKASAAMAKPQSF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgtgttgctttggttgat
ggtcagcgcttatatgatttagatatcgaaagcccaggccacgaatccaaaaaagcaaat
atctacaaaggacgtatcactcgcatcgaaccaagcctggaagcagccttcgttgactac
ggtgccgaacgacacggattcctccctctaaaagaaattgcccgcgaatatttccctgaa
ggttacacttaccaaggtcgtccaagcattaaagaagtgctgactgaaggtcaggaagta
attgtacaggttgagaaagaagaacgtggcagcaaaggtgctgcgctaacgacattcatt
tctcttgctggtagttaccttgttctgatgcccaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggagatgagcgtactcaactgaaagctgcactggacacgttagaccta
ccaaaaggtatgggccttatcgtacgtacagcgggtgtaggcaaaagcgctgaagaatta
gagtgggatcttaacgtcttacttaatcactggggcgccatcaaacaagcttctgatgcc
aacccagctccactgcttattcaccaagaaagtaacgttatcgtccgagctattcgcgat
tatttgcgtcgtgatattggtgaaattcttatcgatagcaacaccatctacgaacgtgcg
ctagaacatatccaactagttcgtccagacttcgtcaatcgagtcaaaaagtatgacggt
gaagttccactatttagtcactaccagatcgaaagccagattgaatcagctttccagcga
gaagtgcgcttgccatcaggtggttcaatcgttattgacccaaccgaagcactaacttca
atcgatatcaactccgctcgcgcaacgaaaggcggagatatcgaagaaactgcactaaat
accaaccttgaagcggccgacgaaattgcacgtcaacttcgcctacgtgatctaggcggc
ttggtcgttattgacttcattgatatgacgccagtgcgtcaccaacgtgaagttgagaac
cgtctgcgagacgcagttcgtcttgatcgcgctcgagtccagattggtcgtatttcacgc
tttggcctactagaaatgtctcgccaacgcttgagcccatctctagcagaagcaagccat
catatctgtcctcgctgtagcggtacaggtgtggttcgtgataatgaatctcttgctctt
tctgttcttcgtttgatcgaagaagaagcattaaaggacaacacagctcaagttctggct
gttgttcctgttccgattgcgtcttaccttctgaacgaaaagcgtcgttcaatcaaccac
attgaacgcattcaggaagttaagatcacggtagttcctaactcagatatggaaacaccg
catttcgaagtaattcgagttcgtgaaggtgaagagtttgatttgctgtcttacttgctg
cctaaaaagctcgagtctatgaaagaagccgaaggccgtgaggttgtagagcctgaagtt
aaacctaagaagcttgaagagccagcactaaaaggttttgccgcaccggctcagtctgcg
ccagcaccaaaaccgccaacaaagaaagcaccagagaaaaaatcagaacctcgtgaagag
aaaccgggtctagtctctcgattcttcaaagcgttgggtagtctattcagctctgaacct
gaaaaagaacaggttgaagagaaacaagaaaaagcagcgaagaaagacggtcagcgtaac
aaccgcaaccgccgtaatcgcaacgaccaacgtcgtcgcaattctcgtgacaatcgtaac
gagaatcgtgaagataaacgcgataacaaacgcaataaacctcaacgcgaacgtgatgaa
gctgccaatgaaaataaagcagcatcgaacgaacgtaagcaacaaaatcgcaagcctaag
caggatcgccgtaacaagcagcgagacgacgcgaaagcgagcaaagttgcagaggaaggt
ttgaaacttgcggctgaagcgcaaaaagacgacaaaccgaatcgtgcagaagaaaaaaca
accaaggtaaaagagcgccgtcaacgtcgtaaactgaacaagcaggttcgagttaaagac
cagaaagcgaaagctgaagcggttgaagaagtaaaacaggttaaagctgaagctgtagca
gaagccatcgagcaatcgactgaagaaatcgcagccgaagatgcagaacaacctaaacaa
cgtcgtaatcgccgttctccacgtcatctacgtgccagcggtcaacgtcgtcgtcgtggt
cgcgatcgtcgccctaacccgttccgcttacgcaaaggtggtgttgcttctccagaaatg
gcaatgggtaaagtcatgccaagctacggtatctctaaaccagaaccgaagcacaaagca
aaagctgaacaggctgcggcaccagaagtggtcactcaagcacttggtgggttcgcttgc
cctgaaatggcaatgggcaaagttatcgtacgtcgccaagagccagtgattgaagagccg
aaagttgttgagcaagctgctacggttgaagccacacctgtgaagacacctgcacctaaa
gcggttgagtcacaagttgctccagaaccagttgcagacacggctgctattgtagaagcg
gaagcagcacctgcccctgttaatacaagctctgagattatcgtaccgacagcatttaaa
ggccacgcctctgctccgatggcgaaagcaccaggaaccacagaaatgaaagagattact
gtgattgctgcacctttccgagaagagcgctacctatctaaaggtgcaggcagccaggtt
gctagcaataaagccagcgctgcaatggcaaagcctcaaagcttttaa
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