Vibrio coralliilyticus OCN014: JV59_37490
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Entry
JV59_37490 CDS
T03497
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct02020
Two-component system
vct02040
Flagellar assembly
vct05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JV59_37490
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
JV59_37490
09142 Cell motility
02040 Flagellar assembly
JV59_37490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vct03021
]
JV59_37490
Transcription machinery [BR:
vct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JV59_37490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
CBM_17_28
TetR_C_5-like
Motif
Other DBs
NCBI-ProteinID:
AIU67928
LinkDB
All DBs
Position
1:2881923..2883383
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AA seq
486 aa
AA seq
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MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGSEETSNVE
DKAASDEKEPNTEIAEPEVKDSSELIEKSEISNELEIDTTWEDVYSANTGSTGIALDDDA
PVYQGETTQSLHDYLTWQLDLTPFSETDRTIAMAIIDAVDDYGYLTISTEDILESFDNEE
IELEEIEAVRKRVQQFDPLGVASNNLQDCLLLQLATFPEDTPWLKEAKLVLTDYIDQLGN
RDYKLIIKEAKLKEAELKEALKLIQQLDPRPGSRIAAEHAEYVIPDVSVFKDHGKWVVTI
NPDSVPRLKVNQQYAALGKGNSSDSQYIRSNLQEAKWLIKSLESRNETLLKVAKCIVEHQ
RDFFEYGEEAMKPMVLNDVALDVDMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTDN
GGECSSTAIRALIKKLVAAENSAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPSS
QRKRLL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaactcaagctaggacagcagttagcgatgaccccacagcttcag
caagcaatccgcttgttgcagttgtcaacgttagatcttcaacaggaaattcaggaagcc
ttggattctaaccctctgctagaagtcgaagaaggcagcgaagagacctcaaatgttgaa
gacaaagcagcgagtgatgaaaaagagccgaacactgaaatcgctgagccagaagtcaaa
gacagctcagaactgatagagaagtctgaaatcagcaatgagcttgagattgataccact
tgggaagatgtctatagcgccaatacaggcagtactggtattgcgttagatgatgatgcg
ccagtctatcaaggcgaaaccactcaatctctgcacgactacctcacttggcagttagat
ctgactccttttagcgaaacggatcgaaccatcgctatggccatcattgatgctgtagac
gactatggttacctgaccatttctaccgaagatattcttgaaagctttgataatgaagaa
atagaactcgaagaaatcgaagccgtacgtaagcgcgttcaacaatttgacccattgggt
gtcgcatcaaataacttgcaagactgcttgctactccaattggctaccttcccagaagat
acaccgtggttgaaagaagcgaagttagtgctgactgactacatcgaccaactgggcaat
cgagactacaaactgatcatcaaagaagcaaagcttaaagaagcagagctcaaagaagct
ctcaagctcattcagcagctcgaccctcgacctggaagcagaatcgctgcagagcacgca
gaatacgtcatacccgatgtttccgtgttcaaagatcatggtaagtgggtagtcactatc
aacccagactcagtaccacgtcttaaggtcaatcaacagtacgcagcacttggcaaaggc
aacagttcagatagccaatacattcgctcaaacttgcaggaagcaaaatggctgattaag
agcctagaaagtagaaatgagacgctactcaaagttgctaagtgtattgttgaacatcag
cgtgatttctttgagtatggtgaagaagcgatgaagccgatggttctcaatgacgtcgcc
ttagatgtcgatatgcacgaatccacgatttcacgtgtcacaacccaaaaatacatgcat
acccctcgtggtattttcgaactgaagtatttcttctccagccatgtcagtaccgacaat
ggtggagaatgttcatcaactgcaatccgagcattgattaaaaagctcgttgctgctgaa
aacagtgctaaaccactgagtgacagcaaaattgcagctctactcgctgaccaagggatt
caggtcgctagacgaacaatagctaaataccgagaatcactaggcattgccccttcgagt
cagcgcaaacgcctgctttag
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