Vibrio coralliilyticus OCN014: JV59_37925
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Entry
JV59_37925 CDS
T03497
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JV59_37925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vct03019
]
JV59_37925
03016 Transfer RNA biogenesis [BR:
vct03016
]
JV59_37925
Enzymes [BR:
vct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JV59_37925
Messenger RNA biogenesis [BR:
vct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JV59_37925
Transfer RNA biogenesis [BR:
vct03016
]
Prokaryotic type
tRNA degradation factors
JV59_37925
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
AIU68005
LinkDB
All DBs
Position
1:complement(2954090..2956555)
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AA seq
821 aa
AA seq
DB search
MSESTPNDPFAARESENYENPVPSREFILEFLEQAGVPLNRNDLFEALHLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDVVLPHH
QMKSVLHGDYVLVQPTQNSKRGRKEGRLVRVLEERQTQIVGRFFMEYGYSYVVPDDSRIS
QDILIPNELRAGARMGNVVVIEITERGSRSRGMMGKVIEVLGENMAPGMETQIAIRTHQI
PHEWPEEVDKQIEGLGEEVPEEAKQGRVDLRELPLVTIDGEDARDFDDAVYCEAKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISESGKLSGYKHYEAVMNSHARLTYNKVHHILEGDEELRQRYQPLVPHLEELHKM
YKVLKHARDNRGAIEFETVETKFIFNTERKIDSIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGEQRLTGFRDFLSELGLDLKGGLEPSPTDYADLVRQIGQRQDKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKENGTL
KDRWTPTGGFHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVIA
NVTGFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGAIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGKGKTAKKRAAEAQKKAKAKKNAAANGRRSVDKAKPMVEP
TKRPDGSQEEGKGSKASKKPSDKARKKKPRNKAKKARGKKQ
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagcaccccaaacgacccatttgcagctcgcgaatcagagaactacgaaaac
cctgttccaagtcgagagttcattcttgaatttcttgaacaagctggtgttcctttgaat
cgcaatgatttgtttgaagctctacatctagaaggtgaagagcagtatgaaggtttacgc
cgcagattaagagcgatggagcgtgacggtcaactggtgttcacgcgtcgtcagtgctat
gccttgccagaaaaactcgaaatggtgaaaggttacgttatcggacacaaagatggtcat
ggctgggtgcgacctgaagggagtgtgggcaaagataacgatgtagtactgcctcaccat
cagatgaaaagtgttctgcatggtgactatgttttagtccagccaacacagaactcgaag
cgaggaagaaaagaaggtcgtttagttcgggtacttgaggagcgtcagacgcaaatcgtg
ggtcgcttctttatggagtatggctattcctacgttgtgccagatgactctcgtatcagc
caagatattctcatccccaatgagctgcgtgcaggtgctcgaatgggcaatgtcgtcgtg
attgaaattaccgaacgtggttctcgatcgcgtggcatgatgggtaaagttatagaagtt
ctgggcgagaatatggcgccgggaatggaaacacagatcgcgattcgcactcaccaaatt
cctcacgagtggcctgaagaagtggataagcaaatcgaagggctaggtgaagaagtgcca
gaagaggccaagcaaggtcgtgtcgatttgcgtgaacttccgcttgtcactattgatggt
gaagatgcgcgtgactttgatgatgcggtttattgtgaagcgaagaaaagcggtggctgg
cgcctttgggttgcgattgccgatgttagttactacgtccgcccagattctgcactggat
aaggaagccatcaatcgcggcaactcggtgtatttcccgtcacaagtggtgccaatgcta
ccggaagtgctgtctaacggcttgtgttcgctaaacccacaagttgaccgcctgtgtatg
gtgtgtgaaatgaccatttctgagtcaggtaagctctccggatacaagcattacgaagca
gtgatgaactcgcatgcgcgcctgacctacaacaaagtgcaccatattcttgaaggtgac
gaagaactgcgtcagcgataccaacctttggttcctcatcttgaagaactgcacaagatg
tacaaagtacttaagcatgcgcgagataaccgtggcgccattgagtttgaaaccgttgaa
accaagttcatcttcaatacagagcgtaagattgacagtatcgagccagtgattcgcaat
gacgctcataagatcattgaagagtgtatgattctggctaacatcgcatcagcgtctttg
gttgaaaaagctaaagaaccagcactataccgtattcacgaatctccaggcgaacagcgt
ttgacggggttccgcgattttctcagtgagcttgggttagacctaaaaggtggtctggag
ccatcaccaacagattacgccgatttagtcagacagattggccaacgccaagataaagaa
ttgatccagactatgctgcttcgctcaatgaagcaggcggtgtacaacgccgataactgt
ggtcactttggtctagcgttgaaacgctatgcgcactttacttcacctattcgtcgttac
ccggaccttttgcttcatcgtgcgatcaaatatttaatcgcaaaagagaacggcacgctg
aaagaccgttggacgcctacgggcggctttcactattcctttgatgatatggatttctac
ggtgaacagtgttcgatgaccgagcgtcgtgctgatgatgcgacacgggaagtgtctgat
tggctcaaatgtgagtacatgcaagatcatgtaggcgaagagctggaaggtgtgattgct
aatgtgactggctttggcttctttgtccgattaaccgaactgcatattgacgggctagtg
catatttctacactggcaaacgactactaccagttcgacccaattggacagcgattgatc
ggtgaaagcttcggtgccatctatcgtctaggggatgcagtgaaagtgaaagtgctgtct
gtaaatctagatgatcgacaaattgactttgaattagtcgaaactagtcgtaagctacgc
ggcaaaggaaaaacagccaaaaaacgcgcagccgaagcacagaaaaaagctaaggcgaaa
aaaaacgcggcagcgaatggtcgacgttcagtagacaaagccaagcctatggtcgaacca
actaaacgcccggatggcagccaggaagaaggtaaaggcagtaaagcctcgaagaaacct
tcagataaagcgcgtaagaaaaaaccacgtaataaagcgaagaaagcacgtggtaaaaaa
cagtaa
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