Vibrio coralliilyticus OCN014: JV59_39875
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Entry
JV59_39875 CDS
T03497
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JV59_39875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vct03019
]
JV59_39875
03400 DNA repair and recombination proteins [BR:
vct03400
]
JV59_39875
Enzymes [BR:
vct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JV59_39875
Messenger RNA biogenesis [BR:
vct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JV59_39875
DNA repair and recombination proteins [BR:
vct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JV59_39875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
AIU68348
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All DBs
Position
1:3391396..3393231
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AA seq
611 aa
AA seq
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MTATLLAEQSDPSPTPQSVLEDVFGYQSFRDGQQEVIEAAVNGQDSLVIMPTGGGKSLCY
QVPALVRDGLTLVISPLISLMKDQVDQLKANGVAAECVNSSMPRDELISVYNRMQSGQLK
LVYVSPERVLMRDFIERLESLSLSMIAVDEAHCISQWGHDFRPEYASLGQIKQHFPHVPF
MALTATADDATRNDIMHRLQLNEPHIHLSSFDRPNIRYTLVEKHKPISQVIRFLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVEAHKLNAMSAFAEAQTCRRQVLLNYFGEYSEKPCGNCDICLDPPKHFDATEQAR
KALSCVYRVNQNFGMGYVVEVLRGMQNIRIRENGHDKLTTYGIGRENSHDYWVSIFRQLI
HKGMLFQNITRNSTLQLTEEARPLLRGDTALELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKAIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgacactgcttgccgaacaatctgatccttcaccgactccacaaagcgtactg
gaggatgtgtttggttatcagtcgtttcgagatggtcagcaagaagtcattgaagcagcc
gtaaacggtcaggatagtttggtcatcatgccgactggtggcggtaaatcactctgctat
caggtcccggccttagtccgtgatggcttaacgctggtgatttctcctctgatatcactg
atgaaagatcaggtcgatcagcttaaagctaacggtgttgcggcagagtgtgtcaactct
tccatgccccgcgatgagttgatttcggtctataatcggatgcagtcaggtcagcttaag
ctggtctatgtgtcacctgagcgcgttctgatgcgtgactttatcgagcgtcttgaaagc
ctgtcgctgtccatgatcgctgttgacgaagcacactgtatttctcagtggggacatgat
ttcagacctgaatacgcgtcgctcggccagatcaaacaacactttcctcatgtgcctttt
atggcgctgacggcaacggccgatgatgcgacgcgcaatgacatcatgcatcgtctgcaa
ttgaacgaaccgcatatccacctaagcagtttcgatcgcccgaacatccgttacacctta
gttgagaaacacaaaccaatttctcaggtgatccgttttctcgacactcagaaaggcaac
tgcggcatcatctattgtggtagccgtaagaaagttgaaatggtgacggaaaaactgtgc
aacaatcatattcgtgccgccagttaccatgccggcttagaggcagacgagcgcgcttat
gtgcaagaagcgtttcagcgtgatgatatccaaattgtggtcgccactgtggcgtttggt
atggggatcaacaaacctaacgtgcgctttgtggttcactttgatattccgcgcaacatt
gaatcctactaccaggaaactggtcgtgcaggtcgggatggcttacctgcggaagcgatg
atgctatatgacccagcggatatcagctggctaaggcgtatgttggatgagaaggatgat
gggccacaaaagcaggttgaagcgcataagctcaatgcgatgagtgcttttgctgaagcg
cagacgtgccgccgtcaggtgctgttgaattattttggtgagtatagtgaaaagccttgt
ggcaactgcgacatctgtttggacccgcccaagcattttgatgctactgagcaggcacgt
aaagcgttgtcttgtgtctaccgggttaatcagaactttggtatgggttatgtggttgaa
gtcctgcgtgggatgcagaatatccgcatccgtgaaaatggccacgacaagctcactacc
tatggtatcgggcgtgagaacagccacgactactgggtgagtattttccgccaactgatt
cataaagggatgctgttccagaacattacgcgcaactcgaccttacagcttactgaggaa
gcgcgcccactattgcgtggagataccgctcttgaattagccgtgcctcgtctggatacc
gccgcaagagcggctaagtccgacaaactcaccagtaaaaactacgacaaaaagttgttt
gccaagttgcgtaagttacgcaaagcgattgccgatgaagatggcttaccaccgtacgtg
gtgttcagtgatgccaccttgattgatatggcggaaatcttgccaacctcttatggtgaa
atgctagcggtcaatggagtagggcaacgtaagttagaaaaatacgcggatccattctta
gatttaattcaggagcacattactcatcatggttga
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