Candidatus Vallotiella adelgis: GJV44_00006
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Entry
GJV44_00006 CDS
T07928
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
vcv
Candidatus Vallotiella adelgis
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcv03032
]
GJV44_00006 (hupB)
03036 Chromosome and associated proteins [BR:
vcv03036
]
GJV44_00006 (hupB)
03400 DNA repair and recombination proteins [BR:
vcv03400
]
GJV44_00006 (hupB)
DNA replication proteins [BR:
vcv03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
GJV44_00006 (hupB)
Chromosome and associated proteins [BR:
vcv03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
GJV44_00006 (hupB)
DNA repair and recombination proteins [BR:
vcv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
GJV44_00006 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-DNA_bdg
HU-CCDC81_euk_1
HU-CCDC81_euk_2
DUF937
HU-CCDC81_bac_2
HTH_IclR
DUF7343
Motif
Other DBs
NCBI-ProteinID:
UDG81808
LinkDB
All DBs
Position
9660..9950
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AA seq
96 aa
AA seq
DB search
MNKQELIDTIAAQTGISKAQTSETLDTLLEVITRAVAQGHSVQLVGFGSFASGKRAERTG
RNPKTGETIKIPATQTVKFTAGKAFKNAVNKHYMEI
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacaagaactgatcgacactattgctgcgcagaccggtatcagcaaggcacaa
actagtgagacactcgatacgctgctcgaagttattacaagggctgtggcccaaggccat
agcgttcagttagtcggctttggcagcttcgcttcaggtaagcgggcggagcgtactggc
cgcaacccgaagactggtgagacgattaagattcccgccacacaaacggttaagtttaca
gcaggtaaggcgtttaagaacgctgttaataagcattatatggaaatatag
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