Candidatus Vallotiella adelgis: GJV44_00057
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Entry
GJV44_00057 CDS
T07928
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vcv
Candidatus Vallotiella adelgis
Pathway
vcv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJV44_00057 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcv03021
]
GJV44_00057 (rpoB)
03400 DNA repair and recombination proteins [BR:
vcv03400
]
GJV44_00057 (rpoB)
Enzymes [BR:
vcv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJV44_00057 (rpoB)
Transcription machinery [BR:
vcv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJV44_00057 (rpoB)
DNA repair and recombination proteins [BR:
vcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJV44_00057 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
RnfC_N
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UDG81846
LinkDB
All DBs
Position
72298..76410
Genome browser
AA seq
1370 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHPVPFLLATQLESFNTFLQAHVLATQRRPEGLQAAFTSV
FPIVSHNNFARLEFVSYALSSPAFDVKECQQRGLTYCSALRAKVRLVIFDRESPTKPVIK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILAYFFVFDHFKLMQD
GAQMKFVPDRLRGEVARFDIVDQNGKIIVQKDKRINAKHIRDLENTKTKYISVPEDYLIG
RVLSKNIIDTDTGEVIVNANDEITENVLAKLREVGIQEIQTLYTNDLDQGPYISLTLRID
ETADKTAARIAIYRMMRPGEPPTEEAVETLFNRLFYNEDAYDLSKVGRMKFNRRVGRDEI
HGPMTLTDTDILASIKILVELRNGKGEIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYCFLETPYRKV
IDGKVSDQIDYLSAIEEGRYVIAQANAAIDDDGQLIDELVSAREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTTAVDSGT
TVQVCRGGVIDYVDAGRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVG
DRVAHGDVIADGASTDLGELALGQNMLVAFTPWNGYNFEDSILISERVVADDRYTSIHIE
ELNIVARDTKLGPEEITRDISNLAEAQLNRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTLIDVQVFTREGIPRDKRAQQIIDDELK
RYRLDLNDQLRIVESDAFERLARMFDGKVANGGPKKLAKGTKITREYLDNLDHYHWFDIC
LEDDDAAGQLEAIKESIEQKRHQFDLAFEEKRKKLTQGDELSPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIIPIEDMPYMADGRPCDVVLNPLGVPSRMNVGQILETHLGWAA
KGLGWRIGEMLQTKKVTLLQDLRSLLVKVYNESGRPELIDEMSNDEIIELAQNLKEGVPF
ATPVFDGAHEKEISRMLDLGFPDEIAQQLGMTKSKNQVTLYDGRTGESFERPVTVGYMHM
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT
VKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgtaagagttttgcgaagcgccctatc
gttcacccagttccttttctgctggctacccagcttgaatcatttaacacctttctacaa
gcgcatgtactcgccacgcaacgtaggccggaaggactgcaagccgcatttacatcggtc
tttccaattgtttcgcataataactttgcccgacttgagttcgtcagctatgcgctctca
tcacctgcgtttgatgttaaagaatgccagcagcgtggtctaacctattgctctgcattg
cgggcaaaagtccgcctagtgatcttcgacagggagtcgccaactaagccagttattaaa
gaagtgaaggagcaggaagtatacatgggcgagatcccgctcatgacgccaaccggatct
tttgtaattaacggaaccgagcgcgtaattgtctcgcagctccatcgatcaccaggcgta
ttcttcgagcatgacaagggaaaaacacacagctcgggtaagttgctattctcggcacgc
atcatcccgtatcggggatcgtggctagattttgagttcgacccgaaagatattttgtac
ttccgcgttgaccgtcgccgcaagatgccggtgacgattctgttgaaagctattggcttg
acgcctgagcaaatcctagcgtatttctttgtatttgatcactttaaattaatgcaagac
ggtgcgcagatgaaattcgtgccggatcggctgcgaggagaggttgcacgtttcgatatt
gttgatcagaatggcaagatcattgtgcagaaagataagcggatcaacgctaaacatatc
cgcgacctcgagaatacgaagacgaaatatatctcggtgccagaggactatctgatcggt
cgtgtgctctcaaagaacataattgacacggataccggcgaagtgattgtcaatgcgaat
gacgagattactgagaacgtgctggcaaaactacgcgaagtcggcatacaagaaatacag
acgttgtatacaaacgatctagatcagggtccgtatatttcattaacgctacgtatcgat
gaaactgctgataaaaccgctgcacgcattgcgatttaccgaatgatgcggccaggtgag
ccaccaacagaggaagcagtcgaaacgttattcaaccgtttattttataacgaagatgcg
tatgacctttccaaggtaggtcgtatgaagtttaaccgtcgcgtgggtcgagatgagatt
cacggtccaatgacgttaactgatactgacattcttgcgtctattaagattttggtcgaa
ttgcgcaatggtaagggtgagattgatgatattgaccaccttggaaatcgtcgtgtacgc
tgtgttggtgaattggccgaaaaccagttccgtgctggcctagtgcgtgtagagcgagca
gtgaaggaacgtctaggccaggcagaaagtgaaaacctcatgccacatgacctcattaac
tcaaagccgatttcatcggctattcgtgagttctttggctcgtctcagctatcgcagttt
atggaccagacaaacccgctgtcagagatcacacataagcggcgtgtgtctgcgctaggg
ccaggaggcttgacgcgtgagcgtgctggttttgaagtgcgtgatgtacacccaacccac
tatggtcgagtatgtccgattgaaaccccagaaggtccaaatattggcttgatcaactcg
ctagcactatatgcacatctgaacgaatactgcttcctcgagacaccgtacaggaaagta
atcgacggaaaagtgagcgaccaaatcgactacctatctgcaatcgaagaaggtcggtac
gtgatcgcgcaagcaaatgcagcaatcgatgacgatggtcagctaattgacgagctagtt
tcagcccgagaagctggcgaaacgctaatggttacaccagatcgtattcaatatatggat
gttgcgccttcgcagatcgtgtcagtagcggcttcgctcattccatttcttgagcatgat
gacgcaaatcgcgcgttaatgggttcaaacatgcagcgccaggcagtgccttgcctgcga
ccagaaaaagcggtagttggtactggtattgagcgtacgaccgcggtagattctggcacg
acggttcaagtatgtcgcggtggcgtgatcgactatgttgacgcaggccgcgtagtaatt
cgcgtaaacgatgacgaagctgtagcgggtgaggttggcgttgatatctataatctaatt
aagtatacgcgttcgaatcaaaacacaaatattaaccagcgaccgatcgtaaaggttggc
gaccgtgtcgcacatggcgatgtaatcgccgatggtgcgtcgacagatctaggagagctc
gcgcttggccagaacatgctagtcgctttcacgccatggaacggttacaatttcgaggac
tcaatcctgatctctgagcgtgtagttgccgatgaccgttatacatcgatccacattgaa
gagctcaatatcgtagcgcgcgatacgaagctcgggccagaagaaatcacgcgtgatatc
tctaatctagctgaagcgcagttaaaccgtctagatgaatcaggcatcgtctatattggc
gccgaggtcgaagcaggcgatgtgttggttggtaaagtaaccccaaaaggcgagacacaa
ctaacaccggaagaaaagttgctgcgcgcaatctttggtgaaaaagcgtctgacgtgaag
gatacatcactccgcgtaccatctggcatgacaggcactctgatcgatgtacaagtgttt
acgcgagagggtatcccacgagataagcgtgcacagcagatcatcgatgacgagcttaaa
cgctatcgattagatttaaacgatcagttacggatcgtcgaaagtgatgcatttgagcgg
ctagcccgaatgtttgatggtaaggttgcgaacggtggccctaaaaagcttgcgaagggt
acaaaaattacgcgtgaatacttagataatttagatcattatcactggttcgatatttgc
ttagaagacgacgacgcagcagggcaactagaagcgattaaggaatcaattgagcaaaag
cgccatcaattcgaccttgcattcgaagaaaagcgcaagaaactcacgcaaggcgatgag
ctatccccaggcgttctaaagatggtcaaagtatacttagcagttaagcgtcgcttgcag
ccgggagataagatggccggccgtcatgggaataaaggagttgtttctaagattatcccg
attgaagacatgccatatatggcggacggtcgtccctgcgatgttgtattaaatccgctg
ggcgtaccatctcggatgaatgttggtcagatcctcgagactcatttaggctgggccgca
aaaggtttgggttggcgtattggagaaatgctacagactaagaaggtaacgctattgcag
gatcttcggtcacttctggtaaaagtttataacgaatcggggcgtccagagttaatcgac
gaaatgtccaatgatgaaatcatcgagcttgctcaaaacctgaaggaaggcgtgccgttt
gcaacaccggtatttgacggtgcgcatgaaaaagagatttctcgcatgctcgatcttggg
tttccagatgagatagcgcaacagctaggaatgacgaaatcaaaaaatcaggtcactcta
tacgacgggcgaacaggcgagtcgttcgagcgcccagttacagtcggctacatgcacatg
ctaaagctacatcatcttgtcgacgacaaaatgcatgcacgctcaactggtccgtactcg
ctagtgactcagcagccattgggcggtaaagcgcagttcggtggccagcgcttcggggaa
atggaggtgtgggctctagaggcgtacggtgcatcgtacgttttacaagaaatgctcacg
gtgaaatcggatgacgtgacaggtcgcacgaaagtgtacgagaacctcgtgaaaggcgat
catgtaatcgatgcgggaatgccggagtcgtttaacgtgctagtgaaagaaatccggtca
cttggtatcgatattgatcttgaccggaactaa
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integrated database retrieval system
