Candidatus Vallotiella adelgis: GJV44_00130
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Entry
GJV44_00130 CDS
T07928
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vcv
Candidatus Vallotiella adelgis
Pathway
vcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJV44_00130 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcv03019
]
GJV44_00130 (rnr)
03016 Transfer RNA biogenesis [BR:
vcv03016
]
GJV44_00130 (rnr)
Enzymes [BR:
vcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GJV44_00130 (rnr)
Messenger RNA biogenesis [BR:
vcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJV44_00130 (rnr)
Transfer RNA biogenesis [BR:
vcv03016
]
Prokaryotic type
tRNA degradation factors
GJV44_00130 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
UDG81916
LinkDB
All DBs
Position
complement(150378..152717)
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AA seq
779 aa
AA seq
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MSICATYEFTLTIIDKALSKYPYPIPSREKIRCILLTTKQPLSENNIAEAFEIKPQEQEG
FLRRLSAMERDGQISRDERGYYQPMHSSNFIAGRVQGHRAGYGFLIREDAGNDLFLSNTE
MRKVMHNDRVLARVKGHDRRGRPEASILEITDRANKRIIGRLLNENDVWIVVPEDKRIGH
DILVTRMGKIKPKFGQIVSIELTDFQTSYSRPVGEIVEVLGDIDNPGIEIEIAVRKYGVP
HRFSDEVLTQAAKLPNEVCAADLCGRVDLRDIPLVTIDGEDARDFDDAVYCEAIQIGQQN
CFRLLVAIADVSYYVIDGDSLDHEALVRSTSVYFPRRVIPMLPEKLSNGLCSLNPNVDRC
TLVCDMVINSRGKIKTYQFYPAVMHSAARLTYTEVAAILSNTNGPEAERRTTLLPHLQSL
RDVFKALVQARKRRGAIEFDTIETYIVCNSQGKIDQILPQQRNDAHKLIEECMLAANTCA
ADFLKRNQHPGLYRTHAGPTEEKLAHLRAFLCGFGLTLGGGNKPHSSDYATLMRKIRDRP
DMVMLQMMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRVIHAILAGQK
YEPCSKSALNTVPLLHAHALQNQEEKRVGARDSTWEALGLHCSANERRADEASRDVDAWL
KCYFMRDKLGEEYSGIISGVAPFGIFVQLDLLFIEGLVHVTELGADHFQYDEIKNELRGN
RTGIQYRLSMRVRVQVSRVDSDARKIDFRLVCGISTKSPLRAGSRGIVGNNVRGRAAPM
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatctgtgcgacatacgaattcacgctaactattatcgataaggctttgagtaaa
tacccctatccaattcctagccgagaaaaaattcgctgtatattgctcacaactaaacag
ccgctttcagaaaataacattgctgaagcattcgaaatcaagccccaggagcaagaagga
tttttgaggcgcctgagcgcaatggagcgcgatggccaaatcagtcgtgacgagcgtggt
tattaccaacccatgcattcgtcaaactttatcgcgggtagggttcaggggcatcgagct
ggctatggctttctcattcgagaggatgctggaaacgacttattcctttccaatacagaa
atgcggaaagtcatgcacaacgaccgggtactagcgcgcgtgaaaggacacgaccggcgt
ggtcgtccagaggcaagcattcttgagatcaccgatcgggccaataagcgaattatcgga
cggctactaaacgagaatgacgtatggattgttgtgccagaggacaagagaattggccac
gacatcctcgtaacgagaatgggtaagattaagcctaagttcggccagatcgtctcgatt
gagttaacagatttccaaaccagttattctcggccggttggcgagatcgttgaggtgcta
ggcgatattgataatccgggcatagaaatcgagatcgccgtgcgtaaatacggtgtgcca
caccgcttctcagacgaggtacttactcaagcggccaagctacctaatgaggtgtgcgca
gcagatctgtgcgggcgcgtagacttgcgcgatattccgctcgttacaattgacggtgaa
gatgcacgtgattttgatgatgcagtttattgtgaagcgatccagataggacagcagaac
tgttttcgattgctggtcgcaatcgccgatgtatcgtactatgtcattgatggagatagc
ctcgatcatgaggcgcttgtgcgtagtacatcggtatatttcccgcgacgtgtaatacca
atgctgccagagaagctatcaaacgggctgtgttcactcaatccgaacgtagaccgttgt
acgcttgtctgcgacatggtgattaactctcgcggaaaaattaaaacataccagttttat
ccagctgtgatgcattcagcagcacggctaacatacactgaggtagcagctattctgtcg
aatacgaatggtcctgaggcggaaagacgtactaccttgcttccacaccttcagagctta
cgcgatgtatttaaagcgttagtgcaggcgcgcaagagacgtggagcgatcgaatttgac
acgatagagacctatattgtgtgcaatagccagggtaaaattgatcagatcttgccgcag
cagcgcaatgatgcacacaaattaattgaagagtgcatgttagctgctaatacgtgtgca
gcagattttctaaaacgtaatcagcatccggggctatatcgaactcatgctggtccgacg
gaagagaagctagcgcatcttcgggcttttctatgtggtttcgggttgactttgggcggc
ggaaataagccgcattcaagtgattatgcaactctgatgaggaaaattcgagaccggccg
gacatggtgatgctacaaatgatgctgctccgctcaatgcagcaagctgtctacagtcct
gataatatcgggcattttggtctcgcatatgatgcgtatgcacacttcactagtccgatt
cggcgctatccggatctacttacacaccgcgtgatccatgcgatcttggcaggccagaaa
tacgagccctgctctaaatctgcgcttaatactgtgccactacttcatgcacacgcattg
cagaatcaagaagaaaagcgcgtaggtgcgagagattctacttgggaggcccttggttta
cattgctcagctaatgagcgccgtgctgatgaagcatcacgtgatgtcgatgcatggctg
aagtgctatttcatgcgcgataagctcggtgaagaatatagtggaatcatcagtggcgta
gccccatttggtatttttgtacaacttgacttattgtttatagaagggttagtccacgtt
actgagcttggcgccgaccattttcagtacgacgaaattaagaacgagttacgcggtaat
cgtaccggaatacagtatcgcctatccatgcgagtgcgggtgcaagtcagtcgtgtcgac
tctgatgcacgtaagatcgacttccgcttagtatgcgggatatcgaccaagtctccgtta
cgcgcgggttctcgcggcatagtgggtaacaatgtgcgcggtcgagcagcacctatgtag
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