Candidatus Vallotiella adelgis: GJV44_00221
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Entry
GJV44_00221 CDS
T07928
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vcv
Candidatus Vallotiella adelgis
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GJV44_00221 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcv03021
]
GJV44_00221 (rpoD)
Transcription machinery [BR:
vcv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GJV44_00221 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
UDG81991
LinkDB
All DBs
Position
complement(265307..267355)
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AA seq
682 aa
AA seq
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MAISMTKKLNEVPVDKEASQLDELAGSATPTKSEKTKARDRRAKEKALLKDAFASHQPGT
AEELEERRSKLRALIRLGKERGFLTYAEINDHLPDNFAETEATEGIISTFNDMGISVYEQ
APDAEMLLLNDNAPSASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTRE
GEIEIAKRIEDGLNHMVQAISACPTTISDILSMIERVANNEIRVDELVDGLLDPDTLDKD
GFSTLDADEIESETDVTNEGDHEEDESAVAAAASAAQLELLKRTSLERFALIREWFSKMR
CANEKEGYKSKSYLKAQEAIQAELMSIRFTARTVERLCDTLRAQLDEVRQVERQILHIVV
DKCGMPRAEFIARFPGNETNLDWTKKIVAGEHPYSVVLARNIPAIREQQQRLIDLQARVV
LPLKDLKETNRRMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ
ETGLEPDPAALAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTVAPA
DAALHASMRDVVRDVLDLLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSDKLKSFLEGN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcgatatccatgacgaaaaagctaaatgaggtaccagttgataaggaggccagccaa
cttgatgagttagccggttcggccacaccgacaaagagtgaaaagactaaagcacgagat
cgcagggctaaagaaaaagcgctgctgaaggatgcgttcgcgtctcaccagccaggtact
gctgaggagcttgaagagcgccgctcaaagctgcgagcgctcattaggctaggtaaagaa
cgcggcttcttaacgtacgctgaaatcaacgatcatctaccagataatttcgcagaaact
gaggcgactgaaggaattatcagtacgtttaacgatatgggcatatctgtctatgaacag
gcgcctgatgcagagatgttgctcctcaacgacaacgcgccatcagcgtcatccgatgac
gaggtcgaagaagaagctgaggtcgcattatcaacggtagactctgaatttggccgtaca
actgacccggttcgcatgtacatgcgcgaaatgggtactgttgagctgttaacgcgggaa
ggtgaaattgagattgctaagcgtatcgaagatggtctaaatcatatggttcaggcaatt
tcagcgtgtccgacgactatctccgatatcctgtcgatgatcgagcgggtcgcgaacaat
gaaatccgcgtggatgaactggtggatggtctactcgatcccgacaccttagataaggat
ggctttagcacgttagacgcagatgagatcgaatcggaaaccgatgtcactaacgaaggt
gatcatgaagaagacgaaagtgccgtggcagccgctgctagcgccgcgcagctcgagttg
ctaaagcgtacatcactagagcgctttgcactaatccgagaatggttcagcaaaatgcgg
tgcgcgaatgagaaggaaggctacaagtctaagtcgtacttaaaggcacaagaggcaatt
caagctgaattaatgtcgatccgctttactgcccggacggttgagcggctctgcgataca
ttacgcgctcaacttgacgaggttcgtcaagttgagcgccagattttacatatcgtcgta
gacaagtgcggtatgccgcgcgcagaatttattgcgcgtttcccaggtaatgaaactaac
ctagactggaccaaaaaaattgtcgctggagaacatccatatagtgtagtgcttgcgcgc
aacatcccggcgatccgcgaacagcagcagcgtttaatcgacttgcaggcgcgtgttgtg
ttgccactgaaagatttaaaagaaactaatcgccggatggcggccggcgagctcaaagcg
cgccaggccaagcgcgaaatgacggaggctaacttaagattagtcatttctattgcaaaa
aagtacacgaaccgcggcttacaatttctagatttaattcaggaaggtaatatcggccta
atgaaggctgttgataagttcgaatatcgacggggctataagttctccacatatgcgacg
tggtggattcgtcaggcaattacgcggtcaattgcagaccaggcgcgcacaattcggatt
ccagttcacatgatcgaaacgattaataagatgaatcgaatctcacggcaaatcttgcag
gagacaggtcttgagccggacccagcagcactcgctgaaaaaatggagatgccagaagat
aaaatccgcaagattatgaaaattgctaaggaaccgatttcaatggagacgccgattggc
gacgacgatgattctcacttaggtgattttatcgaagacaataatacagtggccccggcc
gacgctgcattgcacgccagtatgcgagacgttgtaagggatgtactagacttattaact
ccacgcgaggctaaagtattgagaatgcgctttggtatcgagatgagcacagaccataca
ctagaagaggttggtaagcaatttgacgtgacacgggagcgaatccgtcaaattgaggca
aaggcattgcgaaaattgcgtcatccaagccgatcagataaactaaagtccttcttggaa
ggcaactaa
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