Candidatus Vallotia cooleyia: GJV44_00229
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Entry
GJV44_00229 CDS
T07928
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vcv
Candidatus Vallotia cooleyia
Pathway
vcv03030
DNA replication
vcv03410
Base excision repair
vcv03420
Nucleotide excision repair
vcv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJV44_00229 (polA)
03410 Base excision repair
GJV44_00229 (polA)
03420 Nucleotide excision repair
GJV44_00229 (polA)
03440 Homologous recombination
GJV44_00229 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcv03032
]
GJV44_00229 (polA)
03400 DNA repair and recombination proteins [BR:
vcv03400
]
GJV44_00229 (polA)
Enzymes [BR:
vcv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GJV44_00229 (polA)
DNA replication proteins [BR:
vcv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GJV44_00229 (polA)
DNA repair and recombination proteins [BR:
vcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GJV44_00229 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GJV44_00229 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UDG81999
LinkDB
All DBs
Position
complement(276831..279572)
Genome browser
AA seq
913 aa
AA seq
DB search
MLEKRNLEGETLLLVDGSSYLYRSYYAMPNLRGPDGSPTGALFGLINMMKRLRRDISAKY
SACVFDAKGKTFREDWYPDYKANRLPIPEDLSQQIEKIHVAVRALGWPLLMIEHVEADDV
IGTLAVRAAQAGMHVVVSTGDKDLTQLVNERVTLINTMTNQWLDRNGVIAKFGVTPERIV
DYLALIGDTADNVPGVDKCGPNTALKLLAQYQSLDGIIKHANDIKGTIGNNLRRVLTFLP
TARRLVTIHTACDLSSHMQSIAMSLQTRIEDKDELRDVYSRCGFKKWLRDLDSESGHVRC
VTNCETQCAPDIERQYETVNAWEQFEQWLAMIEVAPLTSFSTKTTSLDPMCAHIVGISFS
TVPGRAAYIPLAHCGPDHPVQLSRTEVLKRLKPWLENSAHKKVGQHLKYDAQVLANYAIT
LTGIEHDILLESYVLESHCSHDISTLAMRHLSEQILKYEDVTGKGTAQISFDKVEVGIAT
RYSAEDIDITLRLHRVLYFKIQVEKGLDYVYRSIELPTSRVLQIIERNGVLIDKNRLIRQ
SNELGIRLLELQAEAYALACGEFNLNSPKQIGKIFFQQLQFPVIRKTPSGMPSTDEDVLQ
KLAENYQLPRVLLDYRALTKLKSTYTDKLSKMIKPDTGRVHTQYAQAVAVTGRLTSNSPN
LQNIPVRTPEGRRIREAFIAPLGSRIVSADYSQIELRIMAHISADSALIEAFRHGEDVHC
ATASELFGVTKQDITSNQRRIAKVINFGLIYGMSAFGLASNLGISRDTAKLYINRYFFRH
PGVAQYIDETRVKAKSCGFVQTVFGRRLWLPEISGGNSLRRQAAERAAINAPMQGTAADL
IKMSMIAVQNWIERERVNSRLIMQVHDELVLEVPDNELELIRTKVPELMCSVATFNVPLI
AKLGVGVNWEEAH
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaagcgaaacctcgaaggtgaaactctgctattagtcgatggttcgagttat
ttgtaccgatcatattatgcgatgccgaacttgcgtgggccggatggtagtccgacaggt
gcgctatttggtctgattaatatgatgaagcgattgcgtcgcgacatttcagcaaaatat
agcgcgtgcgtgttcgatgcaaaaggcaagacatttcgtgaagactggtatccggactat
aaagcaaaccgattaccaataccagaagacttgtcccagcagattgagaaaatccacgtt
gcggtacgtgcgctaggctggccgctgctaatgatcgagcatgtagaagctgatgacgtg
atcggaactctggcagtgcgcgccgcgcaggccggtatgcatgtggtggtgtccaccggg
gataaagatctcacgcaactggtaaacgagcgtgtcacattgattaatacgatgaccaat
cagtggctagatcgtaacggcgtgatcgcgaagttcggcgtgactcctgagcgtatcgtc
gactacctagcgttgatcggtgatactgccgataatgtacctggcgtggataaatgtggg
ccaaatactgcacttaaattgcttgcgcaatatcagtctctagatggcattatcaagcat
gcgaatgatatcaagggtacaatcggcaacaatctacgtcgtgtactcacattcctaccc
actgcgcgcaggctcgtcaccatacacactgcatgcgacctgtcctcgcatatgcaatcc
attgcaatgtctctacagacgcgaatagaagataaagacgaactgcgcgacgtctattcg
cgatgcggttttaaaaagtggttacgcgatctcgatagcgaatccgggcacgttagatgc
gtaactaattgcgagactcagtgcgcgcctgacatcgaacggcagtatgaaactgttaac
gcatgggagcagttcgagcaatggttggccatgatcgaggtggcaccacttacgtctttt
agtactaaaactacgtcgctggatccaatgtgcgcgcacattgtcggaatatcattttca
actgtgccagggcgcgctgcatatattccacttgcgcactgtggaccggatcacccagtg
caactctctcgcactgaggtactcaaacgactgaagccgtggctggagaactctgcgcat
aagaaagttggccaacatcttaagtatgatgcgcaggttttagctaattacgctatcacg
ctaaccggcattgagcacgatattttattggagtcgtatgtactcgaatcgcactgctca
cacgatatcagtacgcttgcgatgcggcatctcagcgaacaaatactgaagtacgaagat
gtgactggaaaaggcacggcacaaattagcttcgataaggtcgaagtgggtatagctacc
cgatattctgccgaggatatagacattacattacggttacatcgggttctatatttcaaa
atccaggttgagaaagggctagactacgtctaccgatcaatcgagctgccaacgtctcga
gtgctgcagatcatcgaacgcaatggggttctaatcgacaagaatcggctaataagacaa
agcaacgaacttggcattcggctgctggaattacaggctgaagcgtatgcactagcctgc
ggcgagttcaatttaaactcgccaaagcagattgggaaaatcttctttcaacaattacag
tttccggtgatcaggaagactccatcaggcatgccatccaccgatgaggatgtattacaa
aaactcgccgagaattatcagctacccagggtattgctcgactaccgtgcgttaactaag
ctcaagtccacttatacagataagctttcaaaaatgattaaaccggataccggccgtgtg
catacacaatatgcacaagcggtagctgtaactggtcgactgacatctaatagtcctaat
ctacagaacatcccggttcgtacgccggaaggtcggcgcattcgagaggcattcatcgct
ccgctgggtagcagaatcgtctcagccgattactcgcagatcgaattgcgcatcatggca
cacatctcagccgactcagcactaatagaggctttcagacatggcgaggatgtgcattgt
gcaactgcatcggaactttttggtgtgacgaagcaggacatcacgagtaaccagcggcgc
attgcaaaagtcatcaactttggcttgatttacggcatgagtgcgtttggccttgcatcg
aatttgggtatctcgcgcgatacggccaagctctatatcaaccgctattttttccgccat
cctggggtcgcgcaatatatagatgagactcgggtaaaggcgaaatcgtgtggtttcgtc
cagaccgtgtttggtcgccggttatggctgccggaaattagtggtggcaacagcctgcgc
cgtcaagctgctgaacgtgccgcaattaacgcgccaatgcaaggtactgcagccgacctg
atcaaaatgtcgatgatcgccgtacagaattggatcgagcgcgagcgcgtcaattctcga
ctaattatgcaagtccatgatgaactggtgctggaggtgcctgacaacgaattagagcta
atccgtactaaggttcctgaactcatgtgttcagtcgctacatttaacgtgcccttgatt
gctaagttaggcgtgggcgtcaattgggaggaagcgcattaa
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