Candidatus Vallotiella adelgis: GJV44_00287
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Entry
GJV44_00287 CDS
T07928
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vcv
Candidatus Vallotiella adelgis
Pathway
vcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJV44_00287 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcv03019
]
GJV44_00287 (rne)
03009 Ribosome biogenesis [BR:
vcv03009
]
GJV44_00287 (rne)
Enzymes [BR:
vcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GJV44_00287 (rne)
Messenger RNA biogenesis [BR:
vcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJV44_00287 (rne)
Ribosome biogenesis [BR:
vcv03009
]
Prokaryotic type
rRNA processing factors
GJV44_00287 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UDG82052
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All DBs
Position
355699..358689
Genome browser
AA seq
996 aa
AA seq
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MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKGNIYKGVITRIEPSLEACFINY
GEDRHGFLPFKEVARQYFKEGIGDMRSVRIQDALHEDQELIVQVEKEERGSKGAALTTFI
SLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLELPDGMSMIARTAGIGRSTEEL
QWDLNYLLQLWHAIEATANSTRGPLLIYLESSLVIRAIRDYFQPDISEILIDTHDIQDQA
RAFMEVVMPDNLHKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGGVVIDHTEALVA
IDVNSARSTKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESIKSQREVEQ
RLKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGSGHIRDTESSAL
QVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEVNKIELRFKVNIALIPNKHLETP
HYKLDRLRHDDARLDEPRSSWRMAAEAARELESETSYSKKRDTESKPKQEAAVKGMTPEI
PAPSAVLHQVLQAQPGSPLPVASDRFIGWLKRIFSSESSAPLARARSTAELAQPTRERTG
NNARQNIERTYSYRRGQRPGDRNILHNDIHTPVGCGSHRDNRDPQFLCQTQKASPHVEVD
QSASTERPTHLERTERSARRNHSERKQFEPSPVELLRDEQTVEQSRKAGSLSTGSKLETS
LGRDGEERRRRRRGRRGGRRERNEEVINLTHAADIAEGEGATGATVLSVTARSTILKETH
EAVGYRETAQMSIATPVKPAALVVQKKVVQVANNSGVLPSITSAIIHQKSPPPEPSIVSM
PVTTTAEAVDLLESKLVEREELTSEMSEHAYAPDEAAYPSEHTTITHSGVGYEQTTIVNI
LTIDHEMRSQSRNANNSTPLTEPPALMASLTSEFSKDTLAPIIRSAGLIWISTDADKLRS
AQQDANTIQKSVRLGRERNPLPPTSTELMQQVKTRY
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttatttaatgcaacgcagcaagaagagttgcgcgtagcaatcgtcgat
gggcaaaagctaattgatatcgatattgaaaccaccggccgcgaacagcgaaaaggtaat
atttataaaggagttattacgcgtatcgagccatcgctcgaggcgtgcttcatcaactac
ggcgaagatcgtcatggttttttgccattcaaggaggtcgcccgacagtatttcaaggaa
ggtatcggcgacatgcgttcggtgcgtatccaggatgcactccatgaagatcaggaatta
atcgttcaggtcgaaaaagaggaacgcggaagtaagggtgccgcactgaccacgttcatt
tcactagctggacgctacctagttctcatgcctaataatccgcgcggcggtggagtgtcg
cgacgcatcgagggtgacgatcggcaagagttgcgcgagacaatggcacagctcgaattg
ccggacggcatgagtatgatcgctcgaactgcaggcatcggtcgctctactgaagaactg
caatgggatttaaactacctattgcaattgtggcatgcgatcgaggcgacggctaatagt
acacgcgggccactgctaatttatcttgaatcaagcctagtgatccgtgcgatccgcgat
tacttccagcctgatattagcgaaattctgatcgatacacacgatatccaagatcaagct
cgcgcattcatggaagtagtgatgccagacaatctccataaggttaaacgctaccatgat
gatgtgccattgttttctcgatttcaaatcgagcaccagatcgagaccgcatattcacgt
actgtaccgctgccatccggcggcggtgtcgtgatcgatcatacagaagctttggtggcc
atcgacgtaaactcagcccgttcgactaaaggcgccgacatcgaggaaacagcgttgcgc
acgaatctagaggcggctgatgaagtagcgcgccagttgcgattacgggacttgggcggg
ctgattgtgatcgatttcatcgatatggagtcaatcaaaagccaacgcgaagttgaacaa
cggcttaaggacgcacttaagcatgatcgagcccgggttcagatgggtaaaatctctcgc
ttcggactaatggaactgtcgcgtcagagactacggccatcgctatcagagggcagtcat
gtaacctgtccgcgttgtaacgggagcggtcatatccgcgatacagaatcatctgcactc
caagtgctgcgaattattcaagaagaagcgatgaaggaaaacactgcggcaattcattgc
caagttccagttgaggtaactgccttcctattaaatgaaaaacgccaagaagtcaataaa
attgaattacgtttcaaggtaaatatcgctctaattccgaataagcatcttgaaacaccg
cactataagctagatcgcctgcgtcatgacgacgcgcgactcgacgagccacgttcatcg
tggcgcatggcagcagaagcggcgcgtgagctagaatcagaaactagctatagcaagaag
cgcgatacagaatcgaaaccgaagcaagaggctgctgttaagggaatgacgccagaaatt
ccggcgcctagcgctgtgctacaccaagtattgcaagcccagccgggctcaccattgcct
gtagcaagtgacagatttatcggatggctaaagcgtatcttcagtagcgagtcttccgcc
ccactagcccgagctaggagtacggctgaattggcacagccaactagagaacgtaccggg
aataatgctcgtcagaacatagagcgcacctactcttatcggcgcggccagcggcctggt
gaccgtaacatattacataatgatattcatactccagtaggctgcggctctcatcgcgat
aatcgcgatccgcaattcctttgccaaacccagaaagctagtccccatgtggaggtagat
caatcggcgagcactgaacggccgacgcatctcgaacgtacggagcgtagcgctcgtcgc
aaccatagcgagcgaaagcagtttgagccatcgccagtcgagttactgcgtgacgagcaa
acagtcgaacaaagccgaaaagcgggctcgctaagtaccggctcgaagctagaaactagt
ctcgggcgtgatggcgaggagcgccggcggcgacggcgcggtcgccgcggcggtcgacgc
gaacgcaacgaggaagttattaatctgacccatgccgcagacatagcagaaggagaaggt
gcgacaggtgctactgtactgagcgtcacggctcgatctacgatattaaaggaaactcat
gaggctgtcggatatcgcgaaacagcacagatgtctatcgctacgcctgtgaaaccagct
gcacttgtagtacagaaaaaagttgtgcaggtagctaataattcgggtgtgcttcccagc
atcactagcgcgattattcaccaaaaatcgcctccccctgaaccgtcgatagtatcaatg
ccagtaaccaccactgcggaagcagtggatttactcgaatcaaaactagtagagcgtgaa
gagctgacatcagagatgtcagagcatgcctacgcgccggatgaagcggcttatccctca
gagcacacgacaatcactcattctggagtgggctatgagcaaactactatcgtcaatata
ttgactatcgatcacgagatgcgatctcaatcgcgaaacgctaataattcgactccattg
accgagccgccagccctaatggcttcgttaactagcgagttttcaaaagatacactagcg
ccgattataaggtccgccggacttatatggattagcactgatgccgataagctgcgctcc
gcacagcaagacgcgaacactatccaaaagtcggtgcgtctcggccgcgaacgtaatcca
ttgccgccaacatctacggaactcatgcagcaggtcaagacccgctactaa
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