Candidatus Vallotia cooleyia: GJV44_00439
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Entry
GJV44_00439 CDS
T07928
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcv
Candidatus Vallotia cooleyia
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcv03016
]
GJV44_00439 (rnb)
Enzymes [BR:
vcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GJV44_00439 (rnb)
Transfer RNA biogenesis [BR:
vcv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GJV44_00439 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
UDG82193
LinkDB
All DBs
Position
complement(563856..565805)
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AA seq
649 aa
AA seq
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MNVFFEESGSFKVGIVLNQQNDALQVELPGGRRAKVRSKDVLIEFDSPSAADLMEQADLA
AKEIDLHFLWEISPPDKFRFIDLANDYFGGTPNAVQKSALVLCMHSSPVYFRRKGRGQYQ
RAPEEQLKTALAALERRRQQAIVRQEYEKELKAGRLPNAFDGKVLGLLTHSDKNSIEYKA
LEAAALALGKSAAQLMLDIGGIPSARALHEARFLSEYFPHGTGFPALSVGPLPEDLSEAI
GVQAFSIDDATTTEIDDAFSVQSISDGRIRIGIHIAAPALGIERGDTVDAIARERLSTVY
MPGDKITMLPDDFVSRFTLKEGGLRPVVSLYLIIDTATQDIVMTETVVEHVYVVSNLRHN
VLDEIISEQKLEAGTGNYPHKHEIAVLWLFAKALYERRQQARIGYGLRRELPRNIDYNFY
VDGEHISITPRRRGSPLDLIVAELAILANSRWGAFLHEYGVPGIYRVQRSLGPNRTRMQI
TPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVRHGVTAKLAALFKPQDSDLYAIVQ
NFDETYTAYADYQRRMEHFWCLRWLQQEKMDRVVATIIKDDVVRLQAVPLLLHVPGLGVH
VRGTYVLLEMIEINDLRIEASCRLIEVLGVASLIGNDMTYIRNDPKVAL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgttttttttgaggaatccggtagctttaaggttggcatagtattgaaccagcaa
aatgacgcgctccaggtcgagttgccgggtgggcgtcgcgctaaggtgcgtagcaaggac
gttctgatcgaatttgatagtccgagtgccgccgacctgatggaacaagctgatttagcg
gcaaaggaaattgacttgcattttctttgggaaatctctccaccagacaagtttcgtttc
attgacctagcgaatgactatttcggtggtacaccgaatgctgtgcaaaaaagcgcgcta
gtgctttgcatgcatagttcgccagtctacttccgacgtaaggggcggggacagtatcag
cgggcccctgaagagcagctgaagacggcgctcgcggcgctggagcgccggcgccaacag
gcaatcgtgcggcaagagtatgagaaagagcttaaagccggtaggctacctaacgcgttc
gatggcaaggtgttaggcttgcttacgcattcagacaagaattcgattgaatacaaagcg
ctggaggcagctgcgcttgcattaggtaagtcagcagcacaattaatgctggacatcggt
ggtatcccatcagcacgcgcgttacacgaagcacggttcctatctgagtactttccgcat
ggaaccggcttccccgcgttgagcgtgggtccgttgccggaggatttgagtgaggcaatt
ggcgtgcaagcgttttctatcgacgacgcaaccaccactgagatcgacgacgctttttcg
gttcagtccatatcggatggacgcattaggattggtattcatattgctgcacctgcacta
ggaatcgagcgcggagacactgtagacgccattgcgcgtgaacgcctgtcgaccgtctac
atgccaggcgataagataacaatgttaccagacgattttgttagcagatttaccttgaaa
gaaggtggattacggcccgtagtgtcgctgtatttaatcattgacaccgctacacaggat
atcgtaatgactgagacagtagttgagcatgtatatgtggtgagcaatctgcgacacaat
gtgttagacgagattattagcgagcagaaactcgaggctggtaccgggaactacccacac
aaacacgagatagcagtgctatggctatttgccaaagctttatacgagcgacgccagcag
gcgagaatcggctatggtctaaggcgtgaacttccacgcaatatcgactacaacttttac
gtcgacggcgagcatattagtatcacgccacgccgtcgtggttcgccattagacttgatc
gtcgcggaactagcgattctagcaaatagccgctggggtgcatttttgcatgaatacggt
gtcccgggcatctatcgcgtgcaacgctcgctcggtccaaatcgtacacggatgcagatc
acgccagcgccgcacgaagggctgggtgtagcacagtatgcgtggagtacctcgccgctg
cgccggtatgtcgacttagtgaatcagtggcagttgctggcgtgtgtccgacatggtgtc
actgcgaaactagctgcactgttcaagccgcaggactcggacttatacgctattgtgcag
aattttgacgaaacctatacagcatatgctgattatcagcggcgtatggaacatttctgg
tgtctgcgctggctgcagcaagaaaaaatggaccgggtagtagctacgatcattaaagat
gatgtcgtgcggctgcaagcagttccacttctattgcatgtgcctggcttgggtgtgcac
gtacgtggtacgtatgttctgctcgaaatgatagaaatcaacgatctacggatagaagcg
tcgtgccggcttatcgaagtactgggcgtagcatccttgataggcaacgatatgacatat
atacgcaatgatcctaaggtagcgctatga
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