Candidatus Vallotiella adelgis: GJV44_p00002
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Entry
GJV44_p00002 CDS
T07928
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vcv
Candidatus Vallotiella adelgis
Pathway
vcv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GJV44_p00002 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcv03400
]
GJV44_p00002 (recB)
Enzymes [BR:
vcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GJV44_p00002 (recB)
DNA repair and recombination proteins [BR:
vcv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GJV44_p00002 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
DUF374
Motif
Other DBs
NCBI-ProteinID:
UDG82617
LinkDB
All DBs
Position
unnamed:1563..5288
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AA seq
1241 aa
AA seq
DB search
MTSKVPDLDVFACELDGITQIEASAGTGKTWNICALYIRLLIEKNLKADQILVVTFTKSA
TIELQDRIRALLMQIEEGVELDNPFITRLIGRIVDGEAPEITMQCTLKKIRRALHSFDQA
AIYTIHSFCQRALQVAPFSAAMPFLFKTKADDTALLFDIAAQFWRNRVESEAARVPSFAH
WLVSKGVGPAVLQALLAQRLKKPLADLVWTNPTCNASIDTTIDHFVHASNLWREELEQIT
QWLANCATHLNQRTHKPAQIQAALLAWEHFFARGDRYAAIPKDALKLTLSSLTTSAQARC
KLMAHPFFDSADRLISAIREEQAIHLSHWFSLVREWLQIGPLSVVERHRTAQAISFDGLL
SNLHNALHTHCWLSDALRERYPAALIDEFQDTDPLQFSIFRKIFATKGALFFVGDPKQAI
YSFRAADLHTYLNARTYASARYMLSINQRSSPAMIAACNRLFSANPRAFMLDGLDYYPVR
AGIRARPIFYDRHDMIGATSGSKAALRVWLLPDHIPLNKRDAEHVAAESCATEIARLMYD
SRVGNVMIGTDLLTPANIAILVQTHRQGMLMKRVLHKFGIGSIELSKTSVFSSIDAEQCE
RVLLAIDTPSDFLRLRMALSTDWIGLDASALWDLKKGKPDAIEKQHNQLVVAGLDLASWV
ERFTGYKLLWQDRGFSAMWRIMMRELRIMIRLASAIDGERRLTDVNHLAELLQARDTEHP
GIASTLFWLTIQRTDPSPRDETQLRLESDQDLVQIVTVYKSKGLEYPVVFCPFLTNGALR
AGSGSTPNPLQMAREYYSDDGRAVLHFGCDGNEAQRIDRGMMREQAAERVRLIYVALTRA
VYRCYLVAGVYKSGGYSSTKESRKSVLNWLVAGRSTDLDTWLHEPPETAALLAFWYSLSD
NKDGSIVVMPIPTVEKRDLLSHPDVSHVDVRTRAPTRRLFDGWRTASFSSLVFDRRRLLP
PIDDILHEKPAHEDYDLFQTDEQLIISNLPPIQNSALFGFTDDDILHFPRGLAAGNCLHR
LMELADLCNPASWPTAIVRALSEQPVNSLELDAKRLSAMMIRLLRDLTHTPIEADFMLGD
LDPLRRLTELEFVFPVSSLDMSQFSTMLEEHGITGVTLDDGILHGYMRGFIDSVVEFHSR
FWIIDWKSNYLGNSHHAYRAHAISTVMDTHAYRLQALIYTIALHRHLKARLPGYDYDTHF
GASLYLFLRGVRPDWPGAGIERFKPTRLAIEAFDALFSARK
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgacttctaaggtacccgacctcgatgttttcgcgtgcgagcttgatggcataactcag
atagaagcctctgccggtacaggaaaaacttggaatatctgtgcgctttatatccgactg
ttgatcgaaaaaaacctaaaagcggaccaaatattggttgtaacttttacaaaatcggca
actatagagttgcaagacagaatccgggctcttttgatgcagattgaggagggggtcgag
ctagataacccatttataaccaggcttattgggagaatcgtcgatggtgaagcgccggaa
ataactatgcagtgcactctgaaaaagattcggcgtgcattgcatagtttcgatcaagcc
gcgatttatactattcattcgttttgccagcgtgcgctacaagtagctccgttttcagct
gcgatgccgtttttgttcaagaccaaagctgacgataccgctctgctattcgatatcgct
gcgcaattctggcgtaatcgtgtcgaatcagaagcggcgcgagtaccgagttttgcacat
tggcttgtttcaaagggagtagggcctgcagtactacaggccctactcgcgcaacgattg
aaaaagccgttagctgatcttgtatggactaatccgacgtgtaatgcatcaattgacaca
acgattgatcattttgtccacgctagcaacctatggcgtgaagaactagagcagatcacg
cagtggcttgccaattgcgctactcatctgaaccagcgtacacataagccagctcagata
caagccgctttattggcatgggagcacttttttgcgcgcggagatcgctatgcagcgatt
cccaaggacgctctgaagttgaccttgtcttcactaactacttccgcccaggcaagatgc
aagctaatggcgcacccatttttcgactcggcggatagattaatttctgcgatccgtgaa
gagcaggcaatacatctaagtcattggttttctctggtgcgagagtggttacaaattgga
cccctaagtgtcgttgaacgtcatcgtactgcgcaagccatatcatttgatggcttatta
tctaatttacataatgcgctgcatacgcattgttggctctccgatgcattgcgtgaacga
tatccagcagcgctaatcgacgagttccaagatacggatccgctacagttttctatattt
agaaaaatttttgcaaccaagggtgctttgtttttcgttggtgatccgaagcaagcaatc
tatagttttcgtgctgctgatttacatacttacctaaatgctcgtacttatgctagcgct
cgctatatgttatctattaatcaacggtctagcccagcaatgattgctgcatgcaaccgt
ttgttttctgctaacccacgtgcttttatgctcgacggacttgattattacccggttcgg
gcgggaattagggcgcgaccgatattttacgaccggcacgatatgatcggtgcaactagt
ggtagtaaggcggccttgagagtgtggttgcttccggatcatattcctctgaataagcgg
gatgccgagcatgttgccgccgagtcgtgcgcaacggagatcgcacggctaatgtatgac
tctcgtgtgggcaatgtaatgatcgggactgatctgcttaccccagcaaatattgctatt
cttgtgcagacccatcgtcagggtatgttaatgaagcgagtattgcataaattcggcatc
ggaagtatagaactttctaaaacctcggtattttcgtcgattgacgcagaacaatgcgaa
cgtgtcttgctggcaatcgacacaccaagtgattttctgcgcttgcggatggcattgtct
acggactggatcggcttagacgcgtcggcattatgggatcttaagaaagggaaaccagat
gcgatagagaaacagcataaccagttagtggtagctggcctggatttagcatcatgggta
gagcggttcacgggctataagctactttggcaggatcgcggattttcggcaatgtggcgt
atcatgatgcgggagcttcgtatcatgatacgccttgcgagcgcaatcgacggtgagcgt
aggctgaccgacgtgaatcacctagccgaactattacaagctcgcgataccgaacatcct
ggtattgcttcaactcttttttggctaaccatccaacgcacggatcctagtccgagagac
gagacgcaattgcgtctcgaatcagatcaagatttagtacagattgtaacagtttataaa
tctaaggggcttgagtatcccgttgtattctgtccattcctgactaatggcgcattacgc
gcaggatcaggatctacacccaatccattacaaatggcgcgcgagtactatagtgatgat
ggacgtgctgtgctccacttcggctgtgacggaaatgaagctcagcgcattgatcgaggt
atgatgcgtgaacaagcggccgaacgtgtacgactgatctatgtcgcacttacgcgtgca
gtatatcggtgctatcttgttgcaggggtctataagagcggaggttattcatcgacaaag
gaatctagaaaaagtgttctaaactggctagttgctggcagatcgactgatttagataca
tggctacatgaacctccagaaactgctgcgttattagcattttggtattcgttgtcagac
aacaaagatggcagcatagttgttatgccgatccctaccgtggagaaacgtgatttatta
tcccatcccgatgtatcgcatgtagacgttcgaacacgcgcaccaactcgccgtctcttc
gatggctggcgaaccgctagtttcagctcactcgtctttgaccgacggcgtctcttgcca
cctattgacgatatattgcacgagaaaccagctcatgaggactacgatttatttcagaca
gatgagcagcttattatatctaatctaccaccgatccaaaacagtgcgttgttcgggttt
accgatgatgacattctccattttcctcgaggtctagccgccggcaactgcctacatcga
ctcatggagcttgccgatctttgcaatccagcgagctggccaactgctatcgttcgcgca
cttagcgagcagccggtaaattctcttgagttggacgcgaagcggcttagtgctatgatg
attcgtctgttgcgggatcttacacatactccgattgaagcggactttatgctcggcgat
ctagatccattacgtcgattaaccgagctcgaattcgtctttccagtctcatcgcttgac
atgagtcagttttcgacgatgcttgaggagcacggaattaccggtgtgactctcgacgat
ggtatattgcacggctatatgaggggatttatcgattccgtagttgagttccatagtcga
ttttggattattgactggaaatcaaactatctcggtaactcacatcatgcgtatcgcgct
cacgcaatctcgactgtgatggatactcatgcatatcggctgcaggcactgatttatacg
attgccctgcatcgacatttaaaagctcgattgccaggttacgactatgacacccatttt
ggtgcaagcttgtatctattcttacggggcgtgcgtccagattggcctggtgccggaatt
gaacgatttaaaccgacgcgccttgctatagaggcgtttgacgcattattctcggcgagg
aagtga
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