Venatoribacter cucullus: GJQ55_03925
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Entry
GJQ55_03925 CDS
T07641
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcw
Venatoribacter cucullus
Brite
KEGG Orthology (KO) [BR:
vcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcw03016
]
GJQ55_03925
Enzymes [BR:
vcw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GJQ55_03925
Transfer RNA biogenesis [BR:
vcw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GJQ55_03925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
CSD
SCHIP-1_C
Motif
Other DBs
NCBI-ProteinID:
QQD23685
UniProt:
A0A9X7YMM5
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All DBs
Position
complement(810449..812386)
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AA seq
645 aa
AA seq
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MLDKNALAQLQSLKKEIHDSVPRFSGRVRASNGRFGFVNTDDNQSFFLTPEEMEKVLPGD
VVEFRVEPAGEGKEQAIVEKLLSSDIREFFGTYVVRGKGHFIEADHPTLNRWIFVPPARR
NNAAAGDLVQAHISQHPFPHGKAQADIDAVIGHPSDAGIEQRFTLAKWALPDSFSAAVLA
EASALAANGLDSVLAGRTDLSHLPFVTIDSASTRDIDDALFAEAHSEGWTLWVGIADPSA
LIAPGSELDKAAAERGTSVYLPDLVIPMLPPELSEQLCSLQAGELRPAMVAELRIGEDGG
MQQLHLHEASIRSHAKLSYHQVAQFIDGEEADISAELRGPLLHLHNCAQALANWRKTHCL
IMEDRPDYKLVFDDNGKVKDIVRIERNAAHRLVEECMLACNRSVAGWLAAQNTGFFIEHG
GVRTERHGEVAALLKEQLGLEQKPELHSLADYVGWLQRAGEAASELPLRMIISRQQERSN
LSLEAKPHKGLGFDYYTTFSSPLRKYNDLLIHRIVRELLQQQTPTLPDSDLLLSIQAAQT
NARMAANQAEAWLKLQWLQQLQQQDSELLFDASIVHMNSASITVRLEDCGIEGSIDRRKA
GKEWTFDTKTISHHSDAGRFVLGQPVRVKVLEVQPQARIARFALV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgctcgataaaaacgcccttgctcagcttcagtcgttgaaaaaagaaattcacgacagt
gttccgcgcttcagcgggcgtgtccgtgccagtaacggccgctttggttttgtgaatacc
gatgacaatcagtcttttttcctgactccggaagaaatggaaaaagtgctgcccggcgat
gtggtggaattccgggtggaacccgccggtgaaggcaaagaacaggcgattgtggaaaag
ctgctaagcagcgatatccgggaattttttggcacttatgtggtgcgcggtaaaggccat
tttattgaagccgaccaccccaccttaaaccgctggatttttgtgccgccggccaggcgt
aataacgccgccgccggtgatctggtgcaggcccatatcagccagcacccgtttccgcat
ggcaaagcccaggcggatattgatgccgtaatcggccacccctctgatgctggcatagaa
cagcgctttactctggccaaatgggcgctgccggacagcttcagcgccgccgtcctggcc
gaggccagcgcgttggcagcaaacggactggacagtgtgctggccggccgtaccgattta
tcgcacctgcccttcgttaccattgattcggccagcacccgcgatattgacgatgcttta
tttgctgaagcacacagcgaaggctggaccttatgggtaggcattgccgatccgtcggct
ttaattgcccccggttcggaactggataaagccgccgctgaacgtggcacctcagtgtat
ttgcccgacctggtcattccgatgctgccgccggagttatccgagcaactgtgttcatta
caggcgggggagttgcgcccggccatggtggcggaattacgcattggcgaagacggcggc
atgcagcaattacacctgcatgaagccagcatccgcagtcacgccaaactcagctaccac
caggtagcgcaatttattgacggtgaagaagccgatatcagtgctgaactgcgtggcccg
ttgttgcatctgcataactgtgcgcaggcactggccaactggcgcaaaacccattgcctg
attatggaagaccgcccggattacaagctggtgttcgatgacaacggcaaggtcaaagac
attgtccgcattgagcgcaatgccgcccaccgcctggtggaagaatgcatgctggcctgt
aaccgcagcgtcgccggttggctggcggcgcagaataccggtttctttattgaacacggc
ggtgtgcgtaccgaacgccacggtgaagtggctgcactgttaaaagaacagctggggctg
gagcaaaagccggaattgcacagtctggccgattatgtcggttggctgcagcgcgccggt
gaagccgccagtgaattaccgctgcggatgattatcagccgccagcaggaacgcagtaat
ttatcgctggaagccaagccgcataaaggcctggggtttgattactacaccaccttcagt
tcaccgctgcgcaaatacaacgacctgctgattcaccgcattgtgcgtgaattgctgcag
caacaaaccccgacgctgccggacagtgatttactgctgagcattcaggccgcccagacc
aatgcccgtatggcggccaaccaggccgaagcctggctgaagctgcagtggttacaacag
ctgcagcaacaagacagcgaactgctgtttgatgccagcatcgtgcacatgaattcagcc
agtatcaccgtacggctggaagactgcggcattgaaggcagcatcgaccgccgcaaagcc
ggtaaagaatggacttttgataccaaaaccatcagccaccacagcgatgccggccgcttt
gtgctgggccagccggtgcgggtaaaagtgctggaagtacaaccgcaggcgcgtattgcg
cggtttgcgttggtttaa
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