Venatoribacter cucullus: GJQ55_05390
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Entry
GJQ55_05390 CDS
T07641
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vcw
Venatoribacter cucullus
Pathway
vcw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GJQ55_05390 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcw03400
]
GJQ55_05390 (sbcB)
Enzymes [BR:
vcw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GJQ55_05390 (sbcB)
DNA repair and recombination proteins [BR:
vcw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GJQ55_05390 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GJQ55_05390 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GJQ55_05390 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QQD23946
UniProt:
A0A9X7UXN5
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All DBs
Position
1130982..1132424
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AA seq
480 aa
AA seq
DB search
MNSIVWYDYETFGAQPAWDRPAQFAAIRTDEQLNEIAEPVEIFCRQADDYLPHPQAVLIT
GIVPQDCQSKGVNEHEFMRRINEVFSVPGTCSAGYNSIRFDDEFTRYGLYRNFFDPYARE
WQGGNSRWDLLDVARCAYALRPDGIEWPRNEQGRISFKLELLTAANGLDHGKAHDAVSDV
RATIALARLLRDRQPKLFQYLYGLRRKEAVADLIDVNNHKPLVHISGMYPVEQGCMTVVV
PLCWHPSNKNSVIVWDLQHDPAQLVGLSAEQIQQRLFVKNADLAEGQSRLPLKEIHINKS
PVLAPAKTLTPEQAERWAISGDVLRQHLASLKNGPDLTAVLQQVFSGREFAPATDVDVQL
YDGFFPPADKQAMQSVHQLSPWDLADWPAPFKDKRGEEMLFRFRARNYPDTLNETERERW
EQHRVARLLHNNPDSPLLNFERFAQELQLAAQQVMDDPVKLQWVQDLQLYAESIYPFEAF
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgaacagtattgtctggtacgactacgaaacctttggtgctcaacccgcctgggatcgc
ccggcgcagtttgcggcgatccgcaccgatgaacagctgaacgaaattgcagaaccggtc
gaaattttctgccgtcaggcggacgattatttgccgcatccgcaggcggtgctgattacc
ggcatcgtgccgcaggattgccagagcaagggcgtgaacgaacacgaatttatgcgtcgc
attaatgaggtgttcagcgtgcctggtacctgcagcgccggctataacagcatccgcttc
gatgatgaatttacccgctacggcctgtaccgcaatttctttgacccttatgcgcgcgag
tggcagggcggtaattcgcgctgggatctgctcgacgtggcccgctgcgcctatgcgctg
cgcccggacggtattgaatggccgcgcaatgagcagggccgtatcagctttaagctggaa
ttattaaccgccgccaatggccttgaccacggcaaggcccacgacgcggtgtccgacgtg
cgggccaccattgccctggcgcggctgctgcgcgaccgccaacccaaactgtttcagtat
ttatatggcctgcgccgtaaagaggccgtagcggacctgattgatgtgaataaccacaaa
ccgctggtgcatatttccggtatgtacccggtggagcagggctgcatgaccgtagtggtg
ccgctgtgctggcaccccagtaataaaaattcggtgattgtgtgggatttgcagcacgac
ccggctcagctggtggggttaagcgccgagcagattcagcaacggttgtttgtgaaaaat
gccgatctggccgaaggccagagccgcttaccgttgaaagaaattcatattaataaatca
ccggtactggcaccggccaaaaccttaacgccggagcaggctgaacgctgggccatcagc
ggtgatgtgttacgccagcatttagccagcctgaaaaacggcccggatttaaccgctgtg
ttgcagcaggtattttccggccgggagtttgccccggccaccgatgtcgacgtgcagctg
tacgatgggtttttcccgcccgccgataaacaggccatgcagtccgtgcatcagctgtcg
ccctgggatctggccgactggccggcgccgtttaaggataagcggggagaggaaatgctg
ttccgtttccgcgcccgcaattaccccgataccctcaacgaaaccgagcgtgaacgttgg
gagcaacaccgggttgcccggctactgcataataaccccgactcgccgctgctgaacttt
gaacgctttgctcaggagttgcagctggccgcccaacaggtaatggatgacccggttaaa
ctgcagtgggtgcaggatttacagctgtacgcagaatctatttatccctttgaggccttt
taa
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