Venatoribacter cucullus: GJQ55_06870
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Entry
GJQ55_06870 CDS
T07641
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vcw
Venatoribacter cucullus
Brite
KEGG Orthology (KO) [BR:
vcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcw03019
]
GJQ55_06870 (hrpA)
Enzymes [BR:
vcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GJQ55_06870 (hrpA)
Messenger RNA biogenesis [BR:
vcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GJQ55_06870 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
ABC_tran
ResIII
AAA_30
T2SSE
nSTAND3
nSTAND_NTPase5
SLFN-g3_helicase
AAA_16
PhoH
NACHT
Motif
Other DBs
NCBI-ProteinID:
QQD24215
UniProt:
A0A9X7UWI9
LinkDB
All DBs
Position
complement(1465129..1469055)
Genome browser
AA seq
1308 aa
AA seq
DB search
MRVTTEGFTADRAALQRAIAQCLLKDQHPLRRSLKQLQGLQQQQDALPLLEKIIQRITRS
QQIVAARQTPLTIRYPDELPVAGRREEILAAIRQHQVVVVAGETGSGKTTQLPKVCLEAG
LGIQGRIGHTQPRRLAARAVAQRIADELQTPLGQAVGYQVRFTDHSDDHTRIKLMTDGIL
LAQTQHDRFLNEYDCIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIVITSATIDVERFA
RHFADAAGNPAPVIEVSGRTFPVEMRYRSLLRSEDNEEDLSLYDGIAEALAELRDEDRKQ
GQHGDVLVFLPVEREIRECAEFLRRAQLPATEILPLYARLSAGDQQKIFRPHGGRRVVLA
TNVAETSLTVPGIRYVVDTGVARISRYSYRSKVQRLPVEAISQASANQRAGRCGRTAPGI
CIRLYDESDFLNRPAFTEPEIQRTNLAAVILQMLQLKLGRLQDFPFIDAPDERFIKDGFT
LLQELEAVTERGDMTELGRKMARLPVDPRIGRMLLEAQQRQALREVLIIAAALSAQDVRE
RPPEKQQAADEKHRQWQHEESDFLTLVNLWAGYEEQRQALTQAQLRKWCSKNFLSFMRLR
EWRDTHRQLHLMAKELGLQEQDEAAGYDAVHKSLLAGMLSQIGFKAEGQEYLGARNRKLF
IFPASGQYKKKPKWIMAAELVETSKLFARTVARIEPQWLEEIAKPLLKYQYFEPHWEQQR
GQVVAFEQSTLYGLIVNPRKRVNFASIEPETARSLFIQEALVAQQFNSKLPFYRRNIQLL
KDVTEYEEKSRRRDLVIDEQWQADFYARHLPAEFISQKHLERWYEKASAAEKKALEFTRE
ALLSPAAAGIGANDFPTELEWQGMAFPLSYSFAPGSIDDGVSLSVPAAMLAQVPEAQVEW
LVPGFIGEKVAAVLRGLPKATRKLFVPVPNSAEAFLRQASPQQGSLYAQLLQFINRTVRP
SLELSALLEIELPAHLQMNIRVLQDGKLLAQGRDLAALKQQWAAAGQQQVQTLTHQAYQR
SGIQQWDFGDLPESIQTDAGGLPVRAFPCLRRQGNELELTVEASQAAAQQAHRQGVLHLI
RTSLPELERLFKQSIQKVLGNRWLLAKGLSNQTDITNDLTDAAFQLVFVPLDEALPLTAA
DFRQRLQRRADFMPQAEKLLQEYAGWLELRHKILKTMSGSVSLDRALACSDAKAHLERLM
ARGFMLSQPWAQLQCYSRYLKAIEYRLDKLQGNLPRDRQSMIEFDSLWQLYQAARKKTTY
PGPLLQEFGWLLEEWRVALFAQPLGTREPVSLKRLEKRWQDIVNTDAR
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgaccactgaaggctttactgccgaccgggctgccttgcagcgcgccattgct
cagtgcctgctgaaagatcagcacccgttacgtcgcagtctgaagcagctgcagggcctg
caacagcagcaggatgccttgccgttgctggaaaaaataattcagcgtattacccgcagc
cagcagattgtggccgcacggcagacgcctttaaccatccgctatccggacgaattaccg
gtggccggccggcgtgaagaaattctggccgccatccgtcagcatcaggtggtggtggtt
gccggtgaaaccggctcgggtaaaaccacccagttaccgaaagtctgcctcgaagccggg
ctgggcattcagggccgtattggccacacccagccgcgccggctggcggcccgcgctgtg
gctcagcgcatcgccgatgagctgcaaacgccgctggggcaggcggtggggtatcaggtg
cgctttaccgaccacagcgatgaccatacccgcattaaattaatgaccgacggtattctg
ctggcacaaacccagcatgaccgctttctgaacgaatacgactgcatcattatcgacgaa
gcgcacgagcgcagcctgaacatcgattttctgctcggctatttaaaacagctgctgccg
aaacgcccggacctcaaaattgtgatcacctcggccaccattgatgtagagcgctttgcc
cgtcattttgccgatgccgccggcaacccggcgccggtgatcgaagtgtccggccgtact
tttccggtggaaatgcgttaccgctcgttattgcgcagcgaagacaacgaagaagatctc
agtctctatgacggcattgccgaagcgctggcggaattacgcgacgaagaccgtaaacaa
ggtcagcatggtgatgtgctggtgtttttacccgtcgaacgggaaatccgtgaatgcgcc
gagtttttacgtcgtgcgcaattgccggccactgaaattctgccgctgtatgcccgttta
agcgccggcgatcagcaaaagattttccgtccgcacggtggccgccgggtggtgctggcc
accaacgtcgccgaaacatccttaactgtgccgggtatccgttatgtggtggataccggc
gtggcacgcatttcccgttacagttaccgcagcaaagtgcagcgcttgccggtggaagct
atctcgcaggccagcgccaaccagcgtgccggtcgctgtggccgcaccgcgccgggcatt
tgtattcgcctgtacgatgaaagcgatttccttaaccggccggcatttaccgagccggaa
attcagcgcaccaacttagccgccgttattttacagatgctgcagctgaaactcgggcgg
ttgcaggattttccctttatcgatgcgccggacgagcgttttattaaagacggttttacc
ctgctgcaggagctggaagccgtaaccgaacgcggcgacatgaccgaactcggccgcaaa
atggcgcgcctgccggtcgacccgcggattggccggatgttgctggaagcgcagcagcgt
caggcgctgcgcgaagtgctgattattgccgccgcactcagcgcccaggatgtgcgcgaa
cggccaccggaaaaacaacaggcggccgatgaaaaacaccgtcagtggcaacacgaagag
tcggatttcttaaccctggtcaatctttgggccggctacgaagagcagcgccaggcgtta
acccaggcgcagctgcgcaaatggtgcagcaaaaactttttgtcctttatgcggctgcgc
gaatggcgcgacacccaccgccagctgcacctgatggccaaggaactgggcctgcaggaa
caggacgaagccgccggatatgacgccgtgcataaatcgttgctggccggcatgctcagt
cagattggttttaaagccgaagggcaggagtatctgggcgcgcgcaaccgcaaactgttt
attttcccggcctccggccagtacaaaaagaaacccaaatggatcatggcggcggaattg
gtggaaaccagcaagttatttgcccgcaccgtggcccgcattgaaccgcaatggctggaa
gaaatcgctaagcccttgctgaaataccagtactttgaaccacactgggaacaacagcgc
gggcaggtggtggcctttgagcaaagcaccctgtatggcctgattgtgaatccgcgtaag
cgggtaaactttgccagcattgaaccggaaactgcccgcagcctgtttattcaggaagcg
ttggtggcgcagcaatttaacagcaaactgccgttttaccggcgcaatattcagctgctg
aaagacgtaaccgagtacgaagaaaaaagccgccgccgcgatctggtgatcgacgagcaa
tggcaagccgatttttatgcccggcacttgccggcagaatttatttcccagaagcatctg
gagcgctggtatgaaaaagccagtgccgccgagaaaaaagcactggaatttacccgggaa
gcgttactcagcccggcagcggccggtattggtgccaatgattttcccacggagctggaa
tggcagggcatggcctttccactcagttacagctttgcccccggcagtattgatgacggc
gtcagcctgagcgtcccggcggcgatgctggcgcaggtgccggaggcgcaggtggaatgg
ctggtgcccggctttattggcgaaaaagtcgccgccgtattgcggggcttgccgaaagca
acgcgcaaactctttgtacccgtaccgaacagtgcggaagcctttttgcgtcaggccagc
ccgcagcagggcagtctgtacgcccagctgctgcaatttattaaccgcacggtacggccg
tcactggaattatccgccttgctggagattgaattgcccgcccatctacagatgaatatc
cgcgtactacaggacggtaaattgctggcgcaggggcgggatctggccgcattgaaacaa
cagtgggccgccgccggccagcagcaggtacaaacgcttactcatcaggcgtatcagcgc
agcggtattcagcaatgggattttggtgatttaccggaatccatccagaccgatgccggt
ggcttgcccgtgcgggcatttccctgcctgcgccgtcagggtaacgagctggaattaacg
gtggaagccagtcaggcggcggcccagcaggcacaccgccagggcgtgttgcaccttatc
cgcaccagcctgccggaactggagcggttatttaaacaaagcatccagaaagtactgggt
aatcgctggctgttggccaagggcctgagcaaccagaccgacattaccaacgatttaact
gacgccgcttttcagctggtgtttgtgccactggatgaagccctgccattaactgcagcc
gacttccgccagcgcctgcagcggcgcgctgactttatgccacaggcggaaaaactgctg
caggaatacgccggctggctggagctgcggcataaaattctgaaaaccatgagcggttcg
gtcagcctcgaccgggcgctggcctgcagcgatgccaaggcccatctggagcgcttaatg
gcacggggttttatgctcagccagccctgggcgcaactgcagtgttacagccgttattta
aaagccattgaataccggctggataaactgcagggcaacttgccccgtgaccgccagtcg
atgattgaatttgattcgttgtggcagctgtatcaggccgcccggaaaaaaaccacttac
ccggggccgttgctgcaggaattcggctggttactggaagaatggcgggtggctttattt
gcccagccgctgggtacccgcgagccggtgtcattaaaacgactggaaaagcgctggcag
gacattgtgaacaccgacgcccgctaa
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