Venatoribacter cucullus: GJQ55_08900
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Entry
GJQ55_08900 CDS
T07641
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vcw
Venatoribacter cucullus
Brite
KEGG Orthology (KO) [BR:
vcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcw03032
]
GJQ55_08900 (topA)
03400 DNA repair and recombination proteins [BR:
vcw03400
]
GJQ55_08900 (topA)
Enzymes [BR:
vcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GJQ55_08900 (topA)
DNA replication proteins [BR:
vcw03032
]
Prokaryotic type
DNA Topoisomerases
GJQ55_08900 (topA)
DNA repair and recombination proteins [BR:
vcw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GJQ55_08900 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QQD24571
UniProt:
A0A9X7YPC4
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All DBs
Position
1883567..1886206
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AA seq
879 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHVRDLPVSGSAQPSDPKERARQAALTRK
LSPEEKAIYKKNKAREQLVGRMGIDPDKHWEAHYQILPGKEKVVEELQRLAKDADHIYLA
TDLDREGEAIAWHLREIIGNSKKEYRRVVFNEITKKAIQQAFERPSELNMNRVNAQQARR
FLDRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEYWEAFAATATP
AGEALRLQVSRHNGAEFRPTNEADTSSALALLRQQTLQVSKREDKPTSSKPAAPFITSTL
QQAASTRLGFSVKKTMTLAQRLYEAGYITYMRTDSTNLSQDALESVRQYIDKHLGEAYLP
AQPRLYSSKEGAQEAHEAIRPSDVRLKASDLASMEPDAQRLYDLIWRRFVACQINDAEFT
STSISVSAGTFELRTRGRVMRFDGHLKVLAAMGKGEEDVLLPDVHEGDTLNLTDLEPKQH
FTKPSPRFSEAALVKELEKRGIGRPSTYASIISTIQERGYVSLKGRRFYAEKMGDIVTSR
LVENFSELMDFGFTASMEEQLDHIAEGDANWTDVLDNFYQDFQHKLEVAEGEQGMRPNDP
VNTDIPCPACGRPMQIRTGTTGVFLGCSGYSLPPKERCTQTLNLIAGDEAIAADEDEEAE
SRRLMHKHRCKLCDAAMDSYLLDEQRKLHICGNNPDCSGFEVETGQFKLKGYDGPTLECD
KCGSEMQLKSGRFGKYFGCTNSSCKNTRKLLKSGEAAPPKMDAVPMPELKCQKVDDHYVL
RDGATGLFLAASQFPKKRETRAPLVAELLPYQALLPEKYHYLLDAPRQDNDGNPAIIRYS
RKTKEQYVMTEQDGKATGWSAWYNAGKWQVDEKKKAAKK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggttattgtggagtcgccggccaaggcgaagaccatcaacaagtat
ctgggtaacgactttatcgttaaatccagcgtcggccatgtccgtgatctgccggtatcg
ggttctgcccagcccagcgatccgaaagaacgcgcccgtcaggcggccttaacgcggaaa
ctgtcgccggaagaaaaagccatttataaaaagaacaaagcccgcgaacagctggttggc
cgtatgggcattgacccggacaaacactgggaagcccattaccagattctgcccggcaaa
gaaaaagtggtggaagaattgcaacggttggccaaagacgccgaccatatttatctggca
acggatttggaccgcgaaggagaagccattgcctggcacctgcgcgagattattggcaac
agcaaaaaagaataccgccgggtggtgttcaacgaaattaccaaaaaagccatccagcag
gcctttgaacgcccgtccgaactgaatatgaaccgggtgaacgcccagcaggcgcgccgt
ttccttgaccgcgtggtcggctttatggtgtcaccgctgctgtgggccaaagtcgcccgt
ggcttatccgccggccgggtgcagtcggttgcggtacgtctgattgtcgagcgcgagcgc
gaaatccgcgcctttataccggaagaatactgggaagcttttgccgctacggccacgccg
gctggtgaagccctgcgcttacaggtcagccgccacaacggggccgaattccgccccacc
aacgaagccgataccagcagtgcgctggccttgttacgtcagcaaaccctgcaggtaagc
aagcgcgaagacaaacccaccagctccaagccggccgccccctttattacctccaccctg
cagcaggccgccagtacccggctgggcttcagcgtgaaaaaaaccatgaccctggcccag
cgtctgtacgaagccggttacatcacctacatgcgtaccgactccaccaacctgagccag
gacgcgctggaatcggtgcgccagtacattgataaacacctgggtgaagcttacctgccg
gcgcaaccgcgcctgtacagcagcaaagaaggcgcccaggaagcgcacgaagccatccgc
ccgtcggatgtgcgtctgaaagccagtgacctggccagcatggaaccggatgcccagcgc
ctgtacgacctgatctggcgccgctttgtcgcctgtcagatcaacgatgcagaattcacc
agcaccagcatcagcgtcagcgccggcacctttgagctgcgtacccgcggccgcgtgatg
cgttttgacggccacctgaaagtgctggccgccatgggcaaaggcgaagaagacgtcctg
ctgccggatgtgcacgaaggcgacacgctgaacctgaccgacctggaacccaagcaacac
tttaccaagccgtcaccgcgcttctcggaagcggcactggtaaaagaactggaaaaacgc
ggtatcggccgcccgtccacctacgcctcgattatttccaccattcaggaacgtggttat
gtcagcctgaaaggccggcgtttttatgccgaaaaaatgggcgatatcgttaccagccgg
ctggtcgaaaacttcagcgaactgatggattttggcttcaccgccagcatggaagaacag
cttgaccatattgccgaaggcgatgccaactggaccgacgtactggacaatttttaccag
gatttccagcacaaactggaagtcgccgaaggtgaacagggcatgcgcccgaatgacccg
gtcaacaccgacatcccctgcccggcctgtggccggccgatgcagatccgcaccggcacc
accggggtattcctcggctgctccggctacagcctgccgccgaaagagcgctgcacccaa
accctgaacctgattgccggtgatgaagccattgccgccgatgaagacgaagaagccgaa
agccggcgtctgatgcacaaacaccgctgcaaactctgtgatgccgccatggacagctac
ctgctggacgaacagcgcaagctgcacatttgcggtaacaacccagactgcagcggcttt
gaagtggaaaccggccagttcaaactgaaaggctacgacggcccgacgctggaatgtgat
aaatgcggcagcgaaatgcagctgaaatccggccgtttcggcaagtatttcggctgtacc
aacagcagctgcaaaaatacccgtaaattgctgaaaagcggcgaagcagcaccaccgaaa
atggatgcggtgccgatgccggaactgaaatgccagaaagtggatgaccactatgttctg
cgtgatggcgccaccggtttattcctggccgccagtcagttcccgaaaaaacgtgaaacc
cgcgcaccattagttgcagaactgctgccctatcaggcgctgttaccggaaaaatatcac
tatctgctcgatgccccacgccaggataacgacggcaaccccgccattatccggtacagc
cgcaagaccaaagagcagtacgttatgaccgaacaggacggtaaagccaccggctggtca
gcttggtacaacgccggaaaatggcaggtggacgagaaaaagaaagccgccaaaaaataa
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