Venatoribacter cucullus: GJQ55_10220
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Entry
GJQ55_10220 CDS
T07641
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcw
Venatoribacter cucullus
Pathway
vcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJQ55_10220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcw03019
]
GJQ55_10220
Enzymes [BR:
vcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJQ55_10220
Messenger RNA biogenesis [BR:
vcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJQ55_10220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
Utp25_C
P-loop_SecA
AAA_22
DUF8086
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QQD24818
UniProt:
A0A9X7UZG2
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All DBs
Position
complement(2167859..2169301)
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AA seq
480 aa
AA seq
DB search
MTQFTDLGLAEPILKAVTEQGYTIPSPVQAQAIPAVLAGRDVMAAAQTGTGKTAGFTLPM
LHLLQNGKSAGANRTRALVLTPTRELAAQVGENVAEYGKYLQLRSTVVFGGVSINPQMIA
LRRGVDVLVACPGRLLDLYQQNAIRFDAVEFLVLDEADRMLDMGFIHDIKKILALLPKQR
QNLLFSATFSPEIRTLAKGLVHDPLEIDVSPRNSTAHSVEQWVIPADKKRKPQLLSQLLK
DNQWKQVLVFTRTKHGANRLAEHLQKNDITAAAIHGNKSQGARTRALAEFKSGDIAVLVA
TDIAARGLDIEQLPHVVNFELPNVPADYVHRIGRTGRAGATGEAISLVCAEELEDLEGIE
GLIGKSIERRVLAGFEPQVAVPESRPRAPRKPKKAKDPKGFKDTFDREPRAPGAGRGQRR
PQGDGQRRAEGQGQSQKPRSAGAAANGNRSAGNRADGNRSDSARPQNRSSAPRRPRNPQA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgactcagtttactgatctcggcctggccgaacctattcttaaagccgtgaccgaacag
ggttacaccattccatcccccgtgcaggcacaagccattccggccgtattggccggccgc
gatgtgatggccgccgcccagaccggtaccggcaaaaccgccggctttaccttaccgatg
ctgcacctgctgcagaatggcaaatccgccggtgctaaccgcacccgcgccctggtatta
accccaacccgcgaactggccgcccaggtcggcgaaaacgtcgccgaatacggcaaatac
ctgcagctgcgctctaccgtggtatttggtggcgtcagcattaacccgcaaatgattgcc
ctgcgtcgtggtgtggatgtgctggtggcttgccccggtcgtctgcttgatctgtaccag
caaaacgccatccgctttgatgcggtcgagttcctggtgctggacgaagccgaccgtatg
ctcgacatgggctttattcacgacattaaaaaaattctggcgctgctgccgaaacagcgg
cagaacctgctgttttccgccacgttctcgcccgaaattcgcaccctggccaaaggcctg
gtgcacgatccgctggaaatcgacgtcagcccgcgtaacagcaccgcgcacagtgtcgag
cagtgggtcattccggccgataaaaaacgtaagccgcaactgctcagccagctgctgaaa
gacaaccagtggaagcaggtgctggtatttacccgtaccaagcacggtgctaaccgcttg
gcggaacacctgcagaaaaacgacatcaccgccgcggccattcatggcaataaaagccag
ggcgcccgtacccgcgcactggccgaattcaaaagcggtgatattgccgtgctggtggcc
accgatatcgccgcccgtggtctggatattgaacaactgcctcatgtggtgaacttcgaa
ctgcccaacgtgccggccgactatgtgcaccgcattggccgtaccggccgcgccggcgcc
accggtgaagccatttcgctggtgtgcgcggaagagctggaagacctggaaggcattgaa
ggcctgatcggtaagagcattgaacgccgcgtactggccggttttgaaccgcaggtagcg
gtaccggaatcgcgtccgcgcgcaccgcgcaaaccgaaaaaagccaaagatccgaaaggt
tttaaagacacctttgaccgcgaaccccgcgcgccgggtgccggccgtggccagcgtcgt
ccgcaaggtgacggccagcgtcgtgctgaaggacaaggtcagagccagaaaccccgcagc
gccggtgccgcggccaacggaaaccgcagtgccggtaaccgtgccgatggtaaccgcagc
gacagcgcccgcccgcagaaccgctcctccgcaccgcgccgtccgcgtaacccgcaggcc
tga
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