Vibrio cholerae O49 1154-74: VAA049_1714
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Entry
VAA049_1714 CDS
T03828
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAA049_1714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcx03019
]
VAA049_1714
Enzymes [BR:
vcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VAA049_1714
Messenger RNA biogenesis [BR:
vcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAA049_1714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Utp25_C
UvrD-helicase
HI1480
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AKB03275
LinkDB
All DBs
Position
1878712..1880106
Genome browser
AA seq
464 aa
AA seq
DB search
MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL
ELLAKGQKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM
CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ
NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE
GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT
DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER
LTQALLPRVNLAGFEPTNLLPESKLDTRPLKPKKPKKPKKVEGAGENKGSAAENKPKAGH
RGQPTGQARTAKKGGTHSAPKKPANRPRRSSSKPVTKSSSAKTI
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgctcggtctgtctgcgccaatccttaaagctattgaagagaaagga
tacaatacgccttcaccgattcagttacaggctattcctgcggttttagcaggcaaagac
gtgatggccgcagctcaaactggcacaggaaaaacggctggttttacgctacctatttta
gaattgctggcaaaagggcaaaaagttcgcgccaatcaagttcgtgctttaatccttacc
ccaacgcgtgaactggccgcacaaatccaagacaatgtcatgctctatggccgccatcta
ccgctcaagagcgcggttgtgtttggtggtgtgaaaattaacccacaaatgcagcgaatg
tgtaaaggtgcggatatcttagtggcaaccccaggccgcttaatggatctatataaccaa
aatgcggtcaaatttgatcagttggaaattttggtacttgacgaagcagatcgcatgctc
gacatgggctttattcgtgatattcgtaagatactgaaattattgcctgaaaagcgccaa
aacctattgttttcagctaccttctcgaccgaaatccgtgagcttgccaaaggcttggtg
aataaccccgtcgaaatctcagtcagcccagccaactcaacggcaagaaccgttgagcag
tgcatttatcctgctgatgtgaaaaagaaaccggacatgctggtgaaattggtcaaagag
gggaattggcaacaagtgctggtatttatgcgtaccaagcatggtgccaaccgcttagcg
acctatctcaacgagcaaggtttaaccgcggccgcgattcacggcaataagagccaaggc
gcacgcacccgagcactggcggattttaaagcgggagaggtgcgtattctggtcgcaaca
gatattgcggcgcgtggcattgatatcccgcaactgcctcaagtggtgaattttgaattg
ccgaaaattgctgaagattacgtgcaccgaattggccgaacaggccgtgcaggtgaagtc
ggtaaagcaatatccttggtaagtgccattgaagcaccggaattatttgcgattgagcgt
ttaacgcaagccttactgccccgtgtaaatttagcgggatttgagccgaccaacctgctc
cctgagtcaaaattagacactcgacctttgaaaccgaaaaagcccaaaaagcctaaaaag
gtagagggagctggagaaaacaaaggcagcgcagctgaaaacaaacctaaagctggccac
cgaggccagcctacaggacaagctcgcacagcgaaaaaaggcggcactcattcagcgccg
aaaaaacccgcaaaccgccctcgtcgcagctcttcaaaaccagtgacaaagtcatcatcg
gctaaaacgatttag
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