Vibrio cholerae O49 1154-74: VAA049_2166
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Entry
VAA049_2166 CDS
T03828
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vcx
Vibrio cholerae O49 1154-74
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcx03016
]
VAA049_2166 (rnb)
Enzymes [BR:
vcx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VAA049_2166 (rnb)
Transfer RNA biogenesis [BR:
vcx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VAA049_2166 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AKB01943
LinkDB
All DBs
Position
complement(2419072..2421108)
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AA seq
678 aa
AA seq
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MFQDNPLLAQLKQKIQENLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCIHGDKV
VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN
EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI
DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT
PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD
DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHA
VVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNT
HAGFKAEKMADVVELMTVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY
SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELAL
HRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL
ILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLTEVNQENRSLVGKPTQVFADLVSET
QTSAEQPAEGAENNEPQV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccgctcctcgcgcagcttaagcaaaaaatccaagaaaacctgcct
aaaaaagaaggcaccatcaaagccagtgacaaaggttttggcttcctcgaagtcgatagc
aaaaccagctactttgttccgcctccttatatgaagaagtgtatacatggcgacaaagtc
gtggctttcatccgcaccgaaaatgaacgcgaagtggctgagccttctgaactcatcgag
caatcgctgactcgcttcattggtcgcgtaaagctatttaaaggcaaactcaacgtcgcg
cccgatcatccacaactgaaaaagctgtcgctgaaggcaaaaaccaagaaaggcctcaac
gaagctgacttccaagagggtgactgggtggtcgctcatcttgtgcgccacccgctgaaa
ggtgacgatggtttctttgtgcagatttcacacaaaatcaccgatgccaatgacaaaatt
gccccttggtgggtgacattagcggaaaacgatctgcccaacagcgagccagcgggcatt
gacgattggcaactgaaagatgatgcagacttggttcgtgaagatctgactgcgctgcct
tttgtgaccatcgatggtgaatcgaccaaagatatggacgacgcgctttacgcacagcaa
ctgccaaacggtgattttgcgctgactatcgcgattgccgatccaaccgcttacatcacc
ccagaagatgagatggacaaagttgctcgcgagcgtggctttaccatttatttgccgggt
cgcaacattccaatgttgccacgcgatctggctgatgagctttgctctctgatggaaaac
caagttcgtccagcgctatgctgctcagtcactatccgtaaagatggcgtgattggcgat
gatattcgtttcttcgcagccaacatcaaatctcatgcacgcctagtttatgaccatgtt
tctgactggttggagactggcagctcggaacaatggcaaccaagcgaagaaatcgcccaa
gtggtgcgcgacctctacgctttctcacaagctcgtgcgaactggcgtgaaacccatgcc
gtggtgttcccagatcgtccagactaccgcttcgaactgagtgccgataacgatgtcgtg
gcgatccatgcggacatgcgccgtacggcaaaccgcttggttgaagaatcgatgatcact
gcgaacatctgtgcgggtaaaacgctgcaaaccacatttggttttggtgtattcaatacc
cacgcgggttttaaagctgaaaaaatggccgatgtagtagaactcatgacagtcaacggc
gcacccaatgcggatgcagaaacgctggcaaccgtggaaggctttgccgctctgcgccgc
tggctagccacgcaagaaaccagctacctcgataatcgtattcgtaaataccaaagctac
agtgagattggcaaccagcctctcccccacttcgcgatgggccttgatgtgtacgcaaca
tggacttcgccgattcgtaaatacggcgacatgattaaccaccgtctgctgaaagcgcac
attctgggtaaagccccagtgcaaacgccggatgagacagttggtgaagaactggctctg
caccgtaagcaccacaaaattgctgaacgtaatgtggcagattggctctatgcgcgcaca
ctggccgatgagccagcgaaagaaacccgcttccaagctgagatatttgacatcaaccgt
ccgggcatgcgtgttcgcttactcgaaaatggcgcaatggcctttattccgggagctctg
atcctcgataacaaagagcgtatcgagtgtaatggtgaagacggcacggtactgatcgat
aaagaagtggtgtacaaacttggtgatgtgctggaaatcgtcttgacagaagtcaatcaa
gaaaaccgcagcttagtgggtaaaccaacgcaagtgtttgctgatctggtttcagagacg
caaaccagtgcggagcaacctgctgagggcgcagaaaataacgagccacaagtttaa
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