Vibrio cholerae O49 1154-74: VAA049_2167
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Entry
VAA049_2167 CDS
T03828
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAA049_2167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcx03019
]
VAA049_2167
03009 Ribosome biogenesis [BR:
vcx03009
]
VAA049_2167
Enzymes [BR:
vcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VAA049_2167
Messenger RNA biogenesis [BR:
vcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAA049_2167
Ribosome biogenesis [BR:
vcx03009
]
Prokaryotic type
rRNA helicases
VAA049_2167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKB04141
LinkDB
All DBs
Position
2421482..2423413
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AA seq
643 aa
AA seq
DB search
MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT
LAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENH
DWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSK
LRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREG
GRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRREEA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaccgaaatgggcttcgtatcaccaactcctatccaagcagcagcgattcctgttctg
cttgaaggccgtgatgcactgggtaaagcgcaaacaggtacaggtaaaacagcggcattc
tctttgcctctgctcaacaaacttaatctatctcagtacaagccacaagctatcgttatg
gcgccaacacgtgagctggcgattcaggtagcagctgagatcaaaaacctaggccaaaac
atcaaaggcctcaaggttcttgagatctacggtggtgcttcaattcttgatcaaatgcgc
gctctgaaatctggcgctcacatcgttgtgggtacgccgggtcgtgtaaaagatctgatc
actcgtgatcgtctacacctagacgaatgtcatactttcatccttgatgaagcagacgaa
atgctgaaaatgggcttcgttgatgacgtaacttggatcatggaacaagcgccagagtct
gcacaacgcgtactgttctcagccactatgccgccaatggttaaagaaattgttgagcgt
ttcctacgtgatccagagtgtgttgacgtagcgggctctaaccaaacggtcgcgaaagtt
gagcaacaatactgggtagtaaaaggtgtagagaaagatgaagcgatggctcgtctgctt
gaaaccgaagaaaccgatgcttctatcgtattcgtacgtactcgtcaggatactgagcgt
ctagcggattggctgtgtgcacgtggcttcaaagcggcggctctgcacggtgatatccct
cagtctctgcgtgagcgtactgttgatcatatcaaacaaggtgtgattgatattctggtt
gcgaccgacgttgttgcacgtggtctggacgttcctcgtatcactcacgtatacaactac
gatattccatttgatgtggaatcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaatccgcatgctacgcactatc
gagcgtgtcactcgttcttcaatggaagagatccaactaccgcaccgcgataaagtggct
gaatctcgtctgactaagctgggtcaagagctggcagcagataaagagttcagttcgctg
gagcgtttcgctgatttggttgaaaaactgcaagcgtcactggaaattgatgcaacgact
ctggctgcaatcctgctgaaacgtcagcaaggtaagcgtccactgttttatgtcggcgct
gatccaatgatcgaagcgatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgcgatggtgatcgtcctgctcgtcgtgaattcggtggccgcgatcaagaaaaccac
gattgggatacttaccaactgcaagttggccgtgaccaaggcgttcaagtgaaagacatt
gttggtgctctcgcaaacgaactgggtctgactaaaggttctatcggtgcgatcaaactg
gctcaaggccatacgtttgttcagctaccaaaagccatgtcaaatgacgtttctagcaag
ctacgtaagctgcgtatccgccagaaagaagtgggtgctgtagtgtgtgacttcgatgac
ttccgcgaatctcgtggtggtgctcgtcgtgaaggtggtccacgtcgcgaaggtggtcgt
cgtccagaaggcaaccgtgaaggcggtttccgtggtggtcgtgaaggcggccgcgaaggt
ggtcgtggccgtggtggtgaaggccgtcctttccgtgaaggtgagcgtcgttttgagcgc
aaccgtagtggtgagagcagtggtagctaccgtggtgagcgtggccatagccgtcgtcgc
gaagaagcataa
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