Vibrio cholerae O49 1154-74: VAA049_2179
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Entry
VAA049_2179 CDS
T03828
Name
(GenBank) GAF domain protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VAA049_2179
Enzymes [BR:
vcx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VAA049_2179
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF
GAF_2
Motif
Other DBs
NCBI-ProteinID:
AKB02449
LinkDB
All DBs
Position
complement(2434317..2436200)
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AA seq
627 aa
AA seq
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MAPILSHSIPIPSSMQANWQQMLNLLAEVLKVSATLIMRLRHHDLDVFCTSVGCDNPYQV
GMTERLGTGLYCETVVNTRQLLLVSNADLDPLWKDNPDLELGMRAYCGVPLQWPNGELFG
SLCVTDRQARQFLSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFKVRHKMQSIAS
LNQSLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIG
FANARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQ
LCHRLIHAGQAQFVTEGLPVHLNPYIGVALSRETRDPQQLLRHAVSSMLACKDSGYKVFF
HSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEF
SNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFCIAINVSSVQLKNSGFVEQI
RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK
KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC
DVGQGFLYGKPMPSEVFTLKLESHAQA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgatcctttcacactcgatcccgatcccttctagcatgcaggcaaattggcag
cagatgctcaacctgctggccgaagtgctgaaagtctcagccaccctgatcatgcgttta
cgccatcacgatcttgatgtgttttgtaccagtgtcggctgtgacaatccataccaagtc
ggtatgactgaacgattaggcacaggcttgtattgtgaaactgtggtcaatactcgccag
ttattgttggtcagtaacgccgacctcgacccattgtggaaggataacccagatctagaa
ttgggcatgcgcgcttactgtggcgtaccattgcaatggccaaacggtgagctttttgga
tctttgtgtgtcaccgatcgtcaagctcgccagtttcttagtaccgatcagcaattgata
aaaacctttgctgaatcgattgaagctcagcttaaaaccctttaccaacgcgaaacgctg
ttgcaaatgaaccaagatttgcacttcaaagttcgtcataaaatgcaaagcatcgcctcg
ctgaaccaatctctccatcaggagatcgataaacgccgtgccgcagaacagcagattgag
tatcagcgcagtcacgaccttgggactggctttctaaatcgtacggcattagagcagcag
ctcgcgatgcagctggctcaattagcggaacacgaagaactcgccgtaattcatatcggt
tttgccaatgcccgtcaattacaagcgcggctgggttatcacctttgggatgatgtgcta
aagcagttacgtgaacgacttggtccagtgacggagggggaattactgaccgctcgccct
aattcgaccaatttgacgctgatcttaaaagcccatccgctcgacacccaattaaatcag
ctttgccatcgtttaattcacgctgggcaagcgcaatttgtgacggaggggctgcccgtt
cacctcaacccttatattggtgtggcccttagccgtgaaacacgcgatccgcagcagcta
ctgcgccatgccgtcagcagcatgttggcgtgtaaggactcgggatacaaagtgtttttt
cactctcccgcattagccgataaccatgcacggcaaaatcaattggaaaactatttactg
caagcggtgcgcaacaacgatctgctgctctacttccaacctaaagtcagcatgaaaacc
cagcgctgggtcggtgctgaggcattgttgcgttggaagcatccggtgttgggtgaattt
tccaatgaaaccttgattcatatggcagagcaaaatggtcttatctttgaagtggggcat
tttgttttgcaccaagctttaaaagccgccagtgattggttagcggtgtgcccaaccttt
tgtatcgcgatcaatgtctcttccgtacagctcaaaaacagtggctttgtcgagcagatt
cgagatctgctggcgctgtatcgcttcccggcgcatcagttggaactggaaatcaccgaa
agtggcctgatcgtcgatgagccgaccgcgagtgatattctcaaccgactacacacacta
ggcgtgacattatcactcgatgattttggtacgggttacgcttcgtttcagtatctaaaa
aaattcccatttgatggcatcaagattgataaaagttttatggagcagatcgaacacagt
gaaagcgatcaagaaatcgtgcgttctatgctgcatgtggcgaaaaaactgaacttaaac
gtggtagtggaaggtattgagtcgacgcagcaagagcagttcattctggaacaaggttgc
gatgtcggccaaggctttttatatggcaaacctatgcccagtgaagtgtttaccctcaag
ctcgaaagccacgctcaggcataa
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