Vibrio cholerae O49 1154-74: VAA049_3025
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Entry
VAA049_3025 CDS
T03828
Name
(GenBank) bacterial regulatory, Fis family protein
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VAA049_3025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcx03000
]
VAA049_3025
Transcription factors [BR:
vcx03000
]
Prokaryotic type
Helix-turn-helix
Other families
VAA049_3025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_22
AAA
AAA_16
HTH_29
AAA_2
AAA_5
HTH_22
AAA_14
HTH_7
HTH_50
HTH_23
HTH_17
HTH_IclR
NB-ARC
AAA_13
HTH_Tnp_1_2
DUF815
DUF134
HTH_30
TrmB
HTH_36
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AKB04284
UniProt:
A0A2K2UGK4
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All DBs
Position
complement(3355362..3356696)
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AA seq
444 aa
AA seq
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MSTQFRMDSVPGSLVVVGGTYEPWLAVLEKVGWRCTQVADLRKADALFVETGPCIGIVDL
SHDEFSLNGIANLVSSHKQVRWLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGK
ETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGLGETEEGQQPFLLQADGGTLLLN
DILTLPKSQQLNLLRFLQEGTVETRQGVRAVDVRILAANSSDIEKALIDGDFNEELYHYI
NVLRINVPSLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELM
NQIKRVVLMSDTVVLDESQLDLPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAK
ELGVSRATMYRLLNKHNLITDENF
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcaattccgtatggattcagtacctggctctcttgttgtggtgggaggtacc
tatgaaccctggctggctgtgttggaaaaagtgggttggcgctgtactcaagtagcagat
ttgcgcaaagccgatgcgttatttgtcgagactgggccatgtattggtattgtggattta
agccatgatgaatttagccttaacgggattgcgaatttggtgagtagccataagcaagtc
cgctggctggcgttcattcgtgaggcgcagctcagttcagataccatttgccaatttatc
gttaacttctgtatcgacttttttactgcgccgatccctgatgctcagttgttgagcacc
attggtcaccaacttggcatgctgaagttggaaaagaaagtgtggccacattttggctcg
gccggcaacatgggtttgattggggaatctatgcctatgaagcgtttgcgcgatcagatc
aaacgcattggcccgaccgatgtcagtattttgatctatggcgaaagtggtactgggaaa
gaaacggtggctaaggcgattcacaaaacatcgtcgcgtgcacaaaaacctttcatttca
gttaattgccgagctatgtcagaaaagcgccttgaaagcgagctgtttggtcttggcgaa
acggaggaaggccaacaaccctttttgctgcaagcggatggtggcacactgctgctaaac
gatattttgaccttgcctaaaagccaacagttgaacttactgcgtttcttacaagaaggg
actgtggagacgcgccaaggggttcgtgcagtcgatgtgcgtattctggccgccaattcg
tcagacatcgaaaaagcgctgatcgatggtgattttaacgaagagttgtaccactacatt
aacgtattgcggattaatgtgcctagtttgaaagagcgcgcatcggatatcgtgctactg
gctaaacactttttgcaagaatactccaaagagtacaacgctcaggcgcgtagcttctct
gatgatgccgtacgtgggttaactcgctaccattggccgggtaatgtgcgtgagctgatg
aaccagatcaagcgtgtggtattaatgtcagatactgtggtgctggatgaatctcagctc
gatcttcccaagcgcagcgatggccgtcgcagcctgaaaagcattcgggaacgctccgag
cgtgatgcactgctgctggtgttggagtcgcactctgggcaagtttcaacggcagccaaa
gagctgggagtatcgcgtgcaaccatgtatcgcttactgaataaacacaacttgatcacc
gatgaaaacttctaa
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