Vibrio cholerae O49 1154-74: VAA049_3394
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Entry
VAA049_3394 CDS
T03828
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAA049_3394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcx03019
]
VAA049_3394
Enzymes [BR:
vcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VAA049_3394
Messenger RNA biogenesis [BR:
vcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAA049_3394
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AKB04199
UniProt:
A0A085STW0
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All DBs
Position
3732383..3733699
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AA seq
438 aa
AA seq
DB search
MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG
GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE
QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG
NRKPQQRRPRAPRPKKEA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcataagttcgccgactttggtttacagccacaagtt
attgatggactggaaaaaaaggggtttgtttactgtacccctatccaagcattggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaacagggactggtaaaacg
ctcgcgtttcttactgctaccttcaaccatttattgaccacaccagccgctgaaggccga
gcagaaactcagccacgcgccattattatggccccgactcgtgaactggcaattcagatc
tttaatgatgccgagcctttgttggcctccaccggtctgaaagcagctttggcttatggt
ggcgaaagctatgataagcaactcgcaaaattgcaaagtggcgtcgatattctgatcggg
accaccggccgcattatcgatttctacaaacagcgtgtattcaacctcaatcacattcaa
gcagtggtactggatgaagcagatcgcatgtttgatctcggctttattaaagacattcgt
ttcttgttccgccgtatgcctgagcccaaagatcgtctcaacatgctgttctctgccacc
ctctcttaccgcgtgcaagagctggcttttgaacacatgaacaatcctgaacatgtggtg
gtagagcctgagcaaaaaactggtcatcgcattcaggaagagctgttctacccatcgaac
gaacacaagatggcgctgctacagactcttatcgaagaagagtggccagatcgcgcaatc
atttttgctaacactaagcaccgctgtgaacagatttgggcacatttggcggccgataac
caccgtgttggcctactgactggtgatgtaccgcagaaaaaacgtgagcgtattttagag
cagttcacccaaggtgatgtggacattctggttgcgaccgacgttgcggcacgcggcttg
cacattcctcaagtgacccacgtgtttaactacgatttgcctgacgattgtgaagactat
gtacaccgtattggccgtacgggtcgcgcgggcgcaagtggccactcgataagctttgcg
tgtgaagagtacgcgattaatttgccggcgatcgaaagctacattgagcatgcgattcca
acctcagactacgatccttcagctctgctgacggacttacctgcgcctctgagcctacgt
tcgtcgccacaacagcgccgcaccaataccgcaggttctcgcaatagcaataatggtggc
aatcgcaaacctcagcaacgccgcccacgcgcaccacgcccgaaaaaggaagcctga
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