Vibrio cholerae O49 1154-74: VAA049_478
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Entry
VAA049_478 CDS
T03828
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03410
Base excision repair
vcx03430
Mismatch repair
vcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VAA049_478 (recJ)
03430 Mismatch repair
VAA049_478 (recJ)
03440 Homologous recombination
VAA049_478 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcx03400
]
VAA049_478 (recJ)
DNA repair and recombination proteins [BR:
vcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VAA049_478 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VAA049_478 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VAA049_478 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AKB02991
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Position
500277..502016
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AA seq
579 aa
AA seq
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MIEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVEL
LFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVD
QAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCA
FPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDN
NRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFG
VELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQ
RDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGI
ILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTA
ELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDYLEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatccagcgacgccccgaacctgatctctcacttctccccgaccacatcgac
ccactgttacgtcggctttacctgagccgtggtgtaagcaacgtggcacaacttgaaaaa
gccgccaaagcgctgcactcattcaagcagttacatggtattgatcgtgcggttgagttg
ctgttcgcagcgattgctgagcaaaaacgcatcatagtcgtcggtgattttgatgccgat
ggcgcaaccagttcggcgctttccgtgctcgcgctgcgtatgctcggtagtcgtaatgtc
gattacttagtgccaaaccgttttgaagatggttatggtctgagccctgaagtagttgat
caagcgattgagcgtggcgcagagatgatcatgaccgtggataacggcgtttcatcactg
gaaggggtgcgttacgccaaacagaaagggctacaagtggtggtcaccgatcatcactta
ccgggacaagaactccctgaagtcgatgccatggtaaacccgaacttgcagcagtgtgct
tttccttctaaggcgctggctggggtaggggttgctttctatttgatgatggcactttgc
gtgcacatgcgtcagcaaggttggtttgccgcgcaaggcatggttgaaccgaaattgatg
gaactgatcgatttagtggcactcggtacggtcgccgatgtggtgccactggatgacaac
aatcgtattttggtgcaccaaggtttgcagcgtattcgtgcgggtttagcgcgtcccggt
attcaagctctgattgaagtcgccaaacgggatgcgcgccgtttggtcgctgctgatttt
ggctttgcgcttgggccacggattaacgccgcagggcgtttggatgatatgtcattcggc
gttgagcttttgctgtgtaacaacattcacgctgcgcggcgtatggcgagtgagctggac
ggcctcaatcaaacccgaaaagagattgaagaggggatgaagcaagaggctgtcgcattt
tgtgagcgcttgcaactgagcgatgatcgcgagctgccctacggtttagtgctgtttcag
cgcgattggcaccaaggggtgatcggcattctcgcttcgcgcatcaaagagaaataccat
cgccccgtgattgcgtttgcagaaggtggtgatggcaagctaaaaggttcgtgccgctcg
gttcccggtctgcatatgcgtgatgctctagataaaattgatacgcaaaatccgggcatc
atcctcaaatttggtggtcacgcgatggcggctggattaaccattgaagagcaaaatttt
gaacgtttttgccgactgtttgaccagctagtgcgtgaagagctggatgaagcggcgctc
aaaggcatcattctcagcgatggcgaactgaaaccggaagaattttcgctgcataccgcc
gaattactgcgtgctggtggcccatgggggcaagcgtttcctgagcccctgtttgatggc
gaatttaaagtgctgcaccaaaaactggtcggcgaaaaacacctcaaactgatgcttgaa
ccgctgtataaaggctttccaaccaatgtgatgatcgacgggattgcgtttaatgtcgac
ctacgccgctggccggatgcctcagtcaaaacggtacgtttggcgtacaaactcgacatc
aacgagtttcgcggtaatcaatcattgcaactcatgattgattatctggaagcgaaatga
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