Vibrio cholerae O49 1154-74: VAA049_565
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Entry
VAA049_565 CDS
T03828
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VAA049_565 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcx03400
]
VAA049_565 (recB)
Enzymes [BR:
vcx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VAA049_565 (recB)
DNA repair and recombination proteins [BR:
vcx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VAA049_565 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
WHD_ORC2
AAA_11
AAA_25
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKB04232
LinkDB
All DBs
Position
618749..622375
Genome browser
AA seq
1208 aa
AA seq
DB search
MSADSNKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLS
VDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLL
SAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFITDESRLKAQVVADYWRRQFYPL
PISLANEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARISEIKQHW
LVEREEIEPAVTGSDLHKNSQNALLRRLPILDTWAQSETHDLHVPSELEEFTQSGLLAKS
KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS
AALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGYPQCGLLMIGDPKQAI
YAFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPV
AASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASG
AAAFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL
LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP
MLRAVLTQRHIAERWLTESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA
QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDTESATT
WVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSA
MGFLLQDGQEGGIADLQQALLKQCENLPDVAQCPPPKRFEQAYQPPQLDERELTARELSQ
AIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNF
PRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILDLMESEQIESEWLPVLQQLVDTVLSTP
LDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGML
KGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFL
RSRLAHYNYEQHFGGVFYLFLRGMDGRTDQGVFHTKPSLALLDELDGLIAGRELAQRASK
AGQMELDL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgattcaaataagctcgctgtcacgctcgatacgttgcgctttcccttgcat
ggagcgcgactgattgaagcctcggcaggcaccggaaaaacctataccatcgccgggctc
tatctgcgtctggtgcttggacatggttgcgcggaaactcgccacgcgcatccgctaagc
gttgatcaaattctggtggtgacttttaccgaagcggccaccgctgagctgcgtgaccgt
attcgccgccgcttgcacgatgcgcgccttgcctttgctcgcggcgcgagtgacgatcca
ctgcttcgctccctgctggctgaatttaccgatcacaacttagccgtctctttgttgctg
agtgccgagcgacagatggatgaagcggccattttcaccatccacggtttttgccaacgc
atgctgacacaaaatgcgtttgaatcgggcagtcgctttgaaaatgaattcatcactgat
gaaagtcgtctcaaagcccaagtggtggccgattattggcgtagacagttctaccccttg
cccatttctctcgcgaacgaagtacgccgcttatggccggcgccctctgcgctgttggct
gagattgccggttatctttctgggccgccagtcaaactgactacgcctttaatggaagga
gatttggccgcgctgcaacaagcgcagatagcgcgcatttccgagattaagcagcactgg
ttagtggagcgagaggagattgagcccgccgtaactggctctgacctgcacaaaaatagc
caaaatgcgctgctacgtcgtttgccgattctggatacttgggcgcaaagtgaaacgcac
gatctgcacgtgccgtcagagcttgaagagttcacccaaagcggattgcttgccaaatca
aagaaaggcaatccaccacaattagcgctgtttgaacgaatagaagcatttcttgctgag
cctgtgtcactcaaaacaccgcttttggtgcatgcgattcatcactgtcgtcactggttg
gcgaaagccaaatccacccatcattggctctcgtttgatgacttactgactcaactcagc
gctgcgctcgataatgatgagcaagggctattgggtgagcggatccgcacactgtatccg
gtggcgatgatcgacgaattccaagataccgacccgctgcagtacagcattttcagtcgg
ctgtatctgggctatccgcagtgtggattgttaatgatcggcgacccgaaacaggcgatt
tacgctttccgtggcgccgatattttcacttacatcaaagcgcgcaatcaggtgagcgct
cactacaccttgggtacgaactggcgctccagcgcagctatggtggcggcagttaaccaa
gtgtttagctccgcgactcatccgtttatttacagtgacgacattccctttcagcccgtg
gcggcaagccctggtgctgataaacgccattggtcactggaggggcaagtacaaccagct
ttgacctattggtggccggaagatcttgataaaccacaaagcaaaaccgattactacgcg
caaatggccgaggcgtgtgcggcgcaaatccagcatattttgactgcttcggcctctggc
gcggcggcctttcaccgtggcgaggcgattgaagcgggcgatctggcggtgctggtgcgt
accggtaatgaagcgcgcatggtgcgcgatgcactcagtcagcaaggtatcgccagtgtt
tacctttccaaccgtgacagcgtgtttgccagcgatgtggcgcaagatattgaacgcttg
ctgctcgccgtgtggcagccagaagatgagcgcttgctccgtgcggctgtcgcctcgaat
ctgtttgcgttaaccgccagcgagctggatgcgctgaataacgatgaaaacgaatgggaa
cagttaattgccgaatttcgtcaatatcgccgcttgtggagcgagcgtggcgtattgccg
atgctgcgtgcagtattaactcagcgccacattgccgaacgttggctgacggaaagtgaa
ggtgagcgctggctcaccgattatctgcacatcagcgaactcttgcagcaggccacgcgt
gagatcgatagcgatcagggtttactgcgttttctgactcaggcgatggcggatgctgcg
caagggctcggtggcagtgatgagcagatccagcgtctcgaatccgagcggcgtctggtg
cagattgtcaccatccacaaatcaaaagggcttgagtacccgctggtatttttaccgttt
gtgatgagctatcgcgagagcagtgaaggcaaatattacgatactgaatcggccactact
tgggtcgatttaaccggcaatgaagacgcgttagccaaagccgatcaagaacgtttggca
gaagatttacgcttgctgtatgtggcgctcactcgcgctgtgtatggctgttttattggg
attgcgccgctgcgcaacggcaattcgagccaagagccgacctcggcgcatcgcagtgcg
atggggtttctgctgcaagatggtcaagaaggtggtatcgcggatctgcagcaagcgctg
cttaaacagtgtgaaaacttaccggatgtcgcgcaatgcccgccaccgaagcgtttcgaa
caagcgtatcagccaccccaattggacgagcgagagctgactgcccgtgagttaagccaa
gcgattgatcgccgctggcgagtgaccagttactcaggcttggtgatgcaatcaagtcat
gctcgccatgatcctttgcaagagttgcccttgcttgaagtaggcggttttgatcttgat
agtgcgcaagagcgtgatggagcggcgctggaatctgtcgagcgctcgattttcaatttc
ccgcgtggcgcacgccccggcactttcttgcattcgctgtttgaagaagtggatttccag
caatcggcacacagtgaacccaatactaaaatcatccttgatttgatggaaagtgagcag
attgaaagcgagtggctgccggtgttgcaacagttggttgacaccgtattgagcacgcca
ctggatggtaaagcgctgcgcttacaacaaattatggccgcccagcgtctgaccgagttg
gagtttttactgccaatcgaagtgttggatgcgccaaccctgaatcgcatcacccagcgt
cacgatccgctttcggcacaggcgggcgatctcggttttcatgcggtgcaaggcatgctc
aaaggctttatcgatctggtgtttcaatatcaagggcgctattacgtgctggactggaaa
tccaaccatttaggtgacgatccagcggcgtatcatccacagcgtttgggcagtgcgatg
gccgatcaccgttatgatctgcaataccaaatttatgcgttagcgctgcatcgctttttg
cgcagccgtttagcccattacaattacgagcagcatttcggcggcgtgttttatctcttt
ttacgcgggatggatgggcgcaccgatcaaggcgtattccataccaagccaagtttggcc
ttgttagatgagttggatggattgatcgcagggcgtgagttggcgcaaagggcgagtaaa
gcagggcagatggagcttgatttatga
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integrated database retrieval system
