Vibrio coralliilyticus RE98: IX92_00555
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Entry
IX92_00555 CDS
T03444
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03420
Nucleotide excision repair
vcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX92_00555 (uvrD)
03430 Mismatch repair
IX92_00555 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcy03400
]
IX92_00555 (uvrD)
Enzymes [BR:
vcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX92_00555 (uvrD)
DNA repair and recombination proteins [BR:
vcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX92_00555 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
IX92_00555 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
SseB_C
Motif
Other DBs
NCBI-ProteinID:
AIW17636
UniProt:
A0AAN0SAX8
LinkDB
All DBs
Position
1:112980..115151
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AA seq
723 aa
AA seq
DB search
MDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSV
TFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQQ
RLLRRLIKAQNLDEKQWPARQVSWWINGKKDEGLRPNHIDAYHDPVTKTYLQLYTAYQEA
CDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGPE
SHVMIVGDDDQSIYGWRGAKIENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN
TERMGKELWTDGVEGEPISVYSAYNELDEARFAVNKIKEWQEKGGALNDAAMLYRNNAQS
RVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYLRLMSNRNDDAAFERVVNTPTRGLGD
KTLETIRFAARDRGCTMWQASVALLDEQVLAGRAAGALSRFVELVSALEDDTCEMSLHEQ
TDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEESEEMTLLTAFLTHAAL
EAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPASSGRFS
QTVVKESFNETGFSLGARVMHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAKL
EKL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcattacttcttgacggccttaacgataagcagcgcgaagccgttgccgct
ccacttgaaaatttacttgtcctagcgggcgcggggagtggtaaaacccgggtgctggtg
caccgtatcgcgtggctgatgtcggtggagcaggcgtctcctttttccattatgtcggtg
acgtttaccaataaagccgcagcggaaatgcggggccgtattgaagagcttatgatgggc
agtgcttctgggatgtggaacggcaccttccatggtatctgtcatcgcattctgcgcgcg
cattacctcgatgccaaattgccggaagattttcagatcatcgatacggatgaccagcaa
agactgctgcgccgtctcatcaaagcgcaaaatctggatgagaagcagtggccagcacgt
caggtgagctggtggatcaacggtaagaaagacgaaggtctgcgtccaaatcatattgat
gcttaccacgatcctgtgaccaaaacctatctgcagctctacacggcttatcaggaagcg
tgtgaccgtgcgggtttggtcgacttcgccgaaattcttctgcgtgctcatgagttgttg
cgtgataacaagtttgtccgcgagcactatcaggcgcgctttaaacatatcttggtggat
gagttccaggatactaacaacattcagtacgcttggttgcgaatgatggctggtccagag
tcacacgtgatgattgttggagatgatgaccagtctatatacggctggcgcggtgctaag
attgaaaacattgagaagttcacccgcgaattcccaagcgtaaacaccattcgtctggag
caaaactaccgctcgaccaaaaccatccttgaagcgtccaacactctgattgccaataac
acagagcgtatgggtaaagagctatggactgatggcgtcgaaggtgagcctatctcggtt
tactctgcttacaacgagttggatgaagcccgcttcgcggtcaacaagattaaagaatgg
caggaaaaaggtggtgcactgaatgatgccgccatgctttatcgtaacaacgcccagtct
cgtgtactggaagaagcgctaattcaggctggcctgccatatcgtatctacggtggtatg
cgattcttcgagcgtcaggaaatcaaagatgcattgagctatctacgattgatgtccaac
cgcaatgacgacgcggcgtttgagcgtgtggttaatacaccaacacgtggtctcggagac
aaaaccttagagacgattcgttttgcagcgcgggatcgtggttgcaccatgtggcaagcg
agtgttgctttgctggatgaacaagttctggctggtcgagcggcgggggcgttaagccgt
ttcgttgagctggtcagcgcgttggaagatgatacctgtgaaatgtctctgcatgagcag
acggaccacgtgatcaaatactccggcctgtttgccatgtacgagcaggagaaaggtgaa
aaatccaaagcacgtattgagaacttggaagagctggtaacggcaacgcgtcagttcgaa
aagccggaagaatcagaagaaatgaccttgcttacggcgtttctaacccacgctgcactt
gaggcgggtgaagggcaggctgatgagttcgaagatgcggtgcaactgatgaccttgcac
agtgcaaaaggcctggagttcccactggtgtttatggtcggggtcgaagagggaatgttc
cctagtcagatgtctgctgaagaagcggggcgattggaagaggaacgtcgactttgctat
gtggggatgacgcgggcgatggagaaactctacatcacttatgctgagatgcgtcgcttg
tacggtcaggacaagtatcataaaccgtcgcgatttattcgtgaattgccagaaggctgc
ttggatgaagtgcgtatgaaagcgcaggtcagtcgcccggcaagctcggggcgtttcagt
cagactgtggtcaaagagagtttcaatgaaactggctttagcctaggcgcaagagtaatg
catcccaaatttggtgaagggacgatcatcaattttgaaggcagtggcccacagagccga
gttcaggtcgcattcaatggtgaaggcatcaaatggttagtaacggcttacgccaagttg
gaaaagctctag
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